Table 4.

Deletion identification and classification of undescribed samples

Country	n	hrp2
		No Deletion	Deletion Classification (Partial/Complete)a	ex1-/ex2 + b	ex1 + /ex2-b	ex1-/ex2-b
Cambodia	127	124	2/1	0	0	3
Brazil	20	16	2/2	0	1	3

Country	n	hrp3
		No Deletion	Deletion Classification (Partial/Complete)a	ex1-/ex2 + b	ex1 + /ex2-b	ex1-/ex2-b
Cambodia	127	117	7/3	0	2	8
Brazil	20	5	1/14	0	1	14

^ahrp2/3 deletions assigned to isolates with > 25% CDS positions with zero coverage

^bExon absence (-) assigned to isolates if > 25% exon positions have zero coverage. ( +) signifies exon is present