Table 4.

HD-GWAS results for GenLang selected subset only q < 0.05.

Hypothesis	SNP	Position	Gene	P GWAS	qSFDR
Neuronal Migration/Axon Guidance	rs4818369	21:19055075	BTG3-C21orf91**	2.37 × 10–10	9.00 × 10–4
	rs6090818	20.:46883131	LINC00494**	1.82 × 10–7	3.67 × 10–2
	rs6865160	5:31766737	PDZD2	2.82 × 10–7	4.10 × 10–2
SFARI ASD	rs4818369	21:19055075	BTG3-C21orf91**	2.37 × 10–10	8.00 × 10–4
	rs6090818	20.:46883131	LINC00494**	1.82 × 10–7	3.50 × 10–2
	rs6865160	5:31766737	PDZD2	2.82 × 10–7	3.92 × 10–2

Total SNPs: ~5,610,600.

Upweighted SNPs: Neuronal migration, 116,829; SFARI ASD 371,158.

SNP Single Nucleotide Polymorphism, Position chromosome: base pair (hg19), P GWAS P-value in GWAS, qSFDR q-value from SFDR program.

Additional information including LD SNPs or SNPs in same gene region, rank and up-weighted status in the supplementary material.

Significance threshold q ≤ 2.5 × 10⁻².

**Intergenic and associated with word reading in Gialluisi et al., (6.79 × 10⁻⁶/3.14 × 10⁻⁷).