Table 3.
Annotation of potential candidate genes underlying Meta-QTL regions.
| MQTL | Gene ID | Description | Gene symbol |
|---|---|---|---|
| MQTL1.1 | LOC_Os01g05970 | OsFBO1-F-box and other domain containing protein | OsFBO1 |
| LOC_Os01g12440 | AP2 domain containing protein, expressed | ERF53 | |
| LOC_Os01g10504 | OsMADS3 - MADS-box family gene with MIKCc type-box | MADS3 | |
| LOC_Os01g13770 | DUF250 domain containing protein | OsTPT1 | |
| LOC_Os01g10580 | B-box zinc finger family protein | OsBBX1 | |
| LOC_Os01g15630 | zinc finger, C3HC4 type domain | OsRFP | |
| LOC_Os01g13740 | myb-like DNA-binding domain | OsGLK2 | |
| LOC_Os01g13030 | OsIAA3 - Auxin-responsive Aux/IAA gene family member | OsIAA3 | |
| LOC_Os01g13170 | ubiquitin-conjugating enzyme E2 | OsUBC42 | |
| LOC_Os01g13280 | ubiquitin conjugating enzyme protein | OsUBC37 | |
| LOC_Os01g16650 | ubiquitin-conjugating enzyme | OsUBC27 | |
| LOC_Os01g08930 | DEAD-box ATP-dependent RNA helicase | OsRH39 | |
| LOC_Os01g05640 | receptor-like protein kinase 5 precursor | – | |
| LOC_Os01g08440 | UDP-glucoronosyl and UDP-glucosyl transferase domain | OsUGT75K1 | |
| MQTL2.6 | LOC_Os02g55340 | WD domain and HEAT domain containing protein | OsWD40-57 |
| LOC_Os02g55380 | AP2 domain containing protein | OsERF127 | |
| LOC_Os02g56550 | ABC transporter, ATP-binding protein | OsABCI14 | |
| LOC_Os02g55520 | zinc finger, C3HC4 type domain | – | |
| LOC_Os02g56280 | zinc finger family protein, putative, expressed | – | |
| LOC_Os02g56250 | GATA zinc finger domain containing protein | OsGATA3 | |
| LOC_Os02g57250 | OsIAA10 - Auxin-responsive Aux/IAA gene family member | OsIAA10 | |
| MQTL3.5 | LOC_Os03g47770 | ubiquitin-conjugating enzyme E2 W | OsUBC25 |
| LOC_Os03g47740 | homeodomain protein, putative, expressed | OsBIHD1 | |
| MQTL4.2 | LOC_Os04g46440 | AP2 domain containing protein, expressed | OsERF34 |
| LOC_Os04g41560 | B-box zinc finger family protein | OsBBX11 | |
| LOC_Os04g44820 | zinc finger, C3HC4 type domain | OsRDCP1 | |
| LOC_Os04g45020 | MYB family transcription factor | – | |
| LOC_Os04g48460 | cytochrome P450, putative, expressed | OsCYP704A3 | |
| LOC_Os04g46190 | ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed | OsUCH4 | |
| LOC_Os04g42740 | serine/threonine-protein kinase receptor precursor, putative, expressed | – | |
| LOC_Os04g41570 | ethylene-responsive protein related, putative, expressed | OsbHLH65 | |
| LOC_Os04g45810 | homeobox associated leucine zipper, putative, expressed | Oshox22 | |
| MQTL5.2 | LOC_Os05g03040 | AP2 domain containing protein, expressed | RSR1 |
| LOC_Os05g03760 | zinc finger family protein, putative, expressed | OsTZF5 | |
| LOC_Os05g06270 | zinc finger, C3HC4 type domain containing protein | OsAPIP6 | |
| LOC_Os05g10670 | zinc finger CCCH type family protein, putative | OsTZF1 | |
| LOC_Os05g14180 | OsIAA17 - Auxin-responsive Aux/IAA gene family member | OsIAA17 | |
| LOC_Os05g08960 | ubiquitin-conjugating enzyme, putative | OsUBC8 | |
| MQTL5.5 | LOC_Os05g36360 | U-box domain containing protein, expressed | OsPUB44 |
| LOC_Os05g34940 | OsMADS4 - MADS-box family gene with MIKCc type-box | OsMADS4 | |
| LOC_Os05g36090 | zinc finger DHHC domain-containing protein | – | |
| LOC_Os05g39380 | zinc finger, C3HC4 type domain containing protein | OsRFP | |
| LOC_Os05g41440 | cytochrome P450, putative, expressed | CYP98A4 | |
| LOC_Os05g43920 | auxin response factor 14, putative, expressed | OsARF14 | |
| LOC_Os05g38550 | ubiquitin-conjugating enzyme, putative | OsUBC12 | |
| MQTL10.2 | LOC_Os10g34480 | cytochrome P450, putative, expressed | – |
| LOC_Os10g33940 | auxin response factor 18, putative, expressed | OsARF22 | |
| MQTL12.2 | LOC_Os12g21700 | zinc finger C-x8-C-x5-C-x3-H type family protein | OsC3H66 |
| LOC_Os12g31840 | ZOS12-05 - C2H2 zinc finger protein | OsDjC81 | |
| LOC_Os12g05440 | cytochrome P450, putative, expressed | CYP94C2b | |
| LOC_Os12g29520 | auxin response factor, putative, expressed | OsARF24 | |
| LOC_Os12g05120 | receptor kinase, putative, expressed | – |