Table 6.
Top 20 differentially expressed lincRNAs and adjacent mRNAs
| Seqname of lncRNA | Gene symbol | Fold changea (lncRNAs) | Regulation of lncRNA | Genome relationship | Nearby gene seqname | Nearby gene Symbol | Fold changea (mRNAs) | Regulation of mRNA |
|---|---|---|---|---|---|---|---|---|
| NR_033305 | AA388235 | 66.9199947 | down | downstream | NM_010386 | H2-Dma | 2.170267 | up |
| NR_033305 | AA388235 | 66.9199947 | down | upstream | NM_019420 | B3galt4 | 5.7973092 | down |
| AK047372 | AK047372 | 41.8748727 | down | downstream | NM_001163042 | Haus8 | 2.1908769 | down |
| AK047372 | AK047372 | 41.8748727 | down | downstream | NM_029865 | Ocel1 | 7.5104853 | up |
| AK143879 | AK143879 | 41.7014068 | down | upstream | NM_001193667 | Gm1987 | 2.8931939 | down |
| AK143879 | AK143879 | 41.7014068 | down | upstream | NM_001277167 | Gm12429 | 5.3971264 | down |
| TCONS_00025043 | XLOC_018501 | 28.0948375 | down | upstream | NM_008861 | Pkd2 | 3.0839338 | up |
| AK053990 | AK053990 | 24.5521064 | down | upstream | NM_030707 | Fcrls | 7.1055169 | down |
| ENSMUST00000178906 | Gm10593 | 23.884969 | down | downstream | NM_001193667 | Gm1987 | 2.8931939 | down |
| ENSMUST00000178906 | Gm10593 | 23.884969 | down | downstream | NM_001277167 | Gm12429 | 5.3971264 | down |
| uc007uzp.1 | AK038711 | 23.496569 | up | downstream | NM_001001490 | Oxgr1 | 8.6586855 | up |
| AK037460 | AK037460 | 19.6676915 | down | upstream | NM_001008232 | Asap3 | 2.3508325 | down |
| AK037460 | AK037460 | 19.6676915 | down | upstream | NM_011542 | Tcea3 | 3.3860996 | down |
| uc029usn.1 | Gm5859 | 19.0222774 | down | upstream | NM_001085530 | Gm13298 | 3.895603 | down |
| AK037363 | AK037363 | 15.2204905 | down | downstream | NM_008911 | Ppox | 3.5903657 | down |
| AK136314 | AK136314 | 14.6596357 | down | upstream | NM_008861 | Pkd2 | 3.0839338 | up |
| NR_040401 | C920006O11Rik | 13.1823016 | down | downstream | NM_025274 | Dppa5a | 3.5029739 | down |
| uc029urz.1 | DQ551946 | 12.8034244 | down | downstream | NM_001085530 | Gm13298 | 3.895603 | down |
| AK141495 | AK141495 | 12.6885049 | down | downstream | NM_001193667 | Gm1987 | 2.8931939 | down |
| AK141495 | AK141495 | 12.6885049 | down | downstream | NM_001277167 | Gm12429 | 5.3971264 | down |
| ENSMUST00000151374 | Snhg3 | 12.1370958 | down | downstream | NM_001081651 | Rab42 | 3.2691229 | down |
| ENSMUST00000151374 | Snhg3 | 12.1370958 | down | upstream | NM_001081211 | Ptafr | 2.3332466 | up |
| ENSMUST00000151374 | Snhg3 | 12.1370958 | down | upstream | NM_001161797 | Phactr4 | 3.4588717 | down |
| ENSMUST00000151374 | Snhg3 | 12.1370958 | down | upstream | NM_026039 | Med18 | 2.3377675 | down |
| ENSMUST00000121728 | Gm13301 | 11.4196096 | down | upstream | NM_001085530 | Gm13298 | 3.895603 | down |
| ENSMUST00000178043 | Gm3892 | 11.2523847 | down | upstream | NM_001085530 | Gm13298 | 3.895603 | down |
| ENSMUST00000174778 | Gm10499 | 10.8643014 | up | downstream | NM_008207 | H2-T24 | 2.5411856 | up |
| ENSMUST00000107991 | Gm3892 | 10.8301037 | down | upstream | NM_001085530 | Gm13298 | 3.895603 | down |
| AK052053 | AK052053 | 10.6618917 | down | downstream | NM_001193667 | Gm1987 | 2.8931939 | down |
| AK052053 | AK052053 | 10.6618917 | down | downstream | NM_001277167 | Gm12429 | 5.3971264 | down |
Notes: lincRNAs, long intergenic noncoding RNAs. a DBA/1 mice vs. C57BL/6 mice