Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2021 Aug 5;1(1):vbab016. doi: 10.1093/bioadv/vbab016

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2021. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

PMC Copyright notice

Fig. 3. — Interactive visualizations generated by cblaster. (a) Cluster heatmap visualization of cblaster search results: (1) heatmap colour bar indicating 0% (white) to 100% (blue) identity; (2) names of query sequences; (3) names of organism and scaffold locations of hit clusters; (4) dendrogram of hit clusters generated from their identity to query sequences; and (5) cell hover tooltip with detailed hit information including hyperlinks to genomic position on NCBI. (b) Gene neighbourhood estimation (GNE) visualization: (1) Plot of mean and median hit cluster sizes (bp) at different gap sizes; (2) Plot of total clusters at different gap sizes; (3) Hover tooltip showing values of mean and median cluster size (bp) and total clusters at a given gap size. (c) Visualization of gene clusters, inclusive of intermediate genes (grey colour), identified in (a) generated using the clinker tool via the plot_clusters module in cblaster