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. 2022 Nov 28;7(12):2128–2150. doi: 10.1038/s41564-022-01266-x

Extended Data Fig. 9. Phylogenetic relationships among microbial taxa highlighting log fold changes in abundance relative to environment, and overall co-occurrences with microbially-related metabolites.

Extended Data Fig. 9

Branches are colored by microbial phylum. Annotations include Domain and Phylum level associations (and Class for Proteobacteria), heat maps representing log fold changes in relative abundance for each environment (from songbird), and heat maps summarizing co-occurrences with microbially-related metabolites (from mmvec). Co-occurrence strength indicates (1) the percentage of all microbially-related metabolites for which the co-occurrence rank (that is, log conditional probability) was ≥ 2 (that is, strong), and (2) the median co-occurrence rank value, considering only strong values (in parentheses in the legend).