Table 1.
Comparison of gene CNs between eMSYv3 (Janečka et al. 2018) and ddPCR analysis of the reference male Bravo and a multibreed male horse cohort.
| ETSTY1 | ETSTY2 | ETSTY5 | HSFY | RBMY | SRY | TSPY | UBA1Y | |
|---|---|---|---|---|---|---|---|---|
| Male reference Bravo CN; eMSYv3 (Janečka et al. 2018) | 3 | 7 | 8 | 3 | 2 | 1 | 13 | 8 |
| Male reference Bravo mean CN; ddPCR | 4.92; SD 0.26 | 4.58; SD 0.13 | 3.56; SD 0.05 | 1.09; SD 0.09 | 1.99; SD 0.03 | 0.90; SD 0.07 | 8.48; SD 0.24 | 3.48; SD 0.19 |
| 209 cohort mean CN | 4.66 | 4.74 | 4.34 | 1.01 | 1.82 | 0.95 | 10.47 | 3.57 |
| 209 cohort minimum CN | 1.96 | 2.8 | 1.88 | 0.22 | 0.6 | 0.46 | 5.55 | 1.12 |
| 209 cohort maximum CN | 10.8 | 14 | 29 | 3 | 2.93 | 2.7 | 38 | 12.3 |
| 209 cohort SD | 1.09 | 1.47 | 2.25 | 0.27 | 0.40 | 0.32 | 4.03 | 1.01 |
ddPCR data for the reference Bravo were generated from 30 technical replicates per gene and are presented with SD.