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. 2022 Apr 25;24(12):2093–2106. doi: 10.1093/neuonc/noac107

Fig. 2.

Fig. 2

Decitabine decreases methylation and increases expression of both cancer testis antigens and neoantigens in primary GBM cell lines. (A-C) MA plots comparing expression of (A) all genes, (B) cancer testis antigens and (C) neoantigens in primary GBM cell lines with and without DAC treatment. (D,E) Volcano plots showing differential methylation of (D) cancer testis antigens and (E) neoantigens following DAC treatment. Colored dots represent individual genes with significantly (P < .05) altered expression following DAC treatment, direction of arrow signifies direction of change. (F,G) violin plots showing methylation levels of (F) cancer testis antigens and (G) neoantigens of primary cell lines with and without DAC treatment as well as primary tumor samples. Data shown are from 3 biological replicates. Tumor—primary tumor sample; control—primary tumor cell lines not treated with DAC; DAC—primary tumor cell lines treated with DAC. * P < .05, ** P < .01, *** P < .001, **** P < .0001.