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. 2022 Dec 2;22:557. doi: 10.1186/s12870-022-03955-5

Table 1.

Summary of data and tools that could be browsed and used for the five orchid species (Phalaenopsis equestris, Dendrobium catenatum, Apostasia shenzhenica, Platanthera zijinensis, and Platanthera guangdongensis)

Genome browser Scaffold ID, Scaffold sequence, Gene model, miRNA
Gene annotation Gene ID, Gene sequence, BLAST top hit descriptions, KEGG pathway, GO terms, Interpro description, Swissprot description, TrEMBL description, miRNA
Gene expression Gene ID, FPKM values in various tissues
Metabolism pathway Gene ID, Genes mapped to the KEGG pathways
Gene order Gene ID, Physical positions of genes
Synteny Gene ID, Physical positions of genes
miRNA-targets information miRNA gene ID, Structure of miRNA, Target gene IDs of miRNA, Binding sites in the target genes of a miRNA
BLAST tools BLASTN, BLASTX, tBLASTX, BLASTP, tBLASTN