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. 2022 Oct 6;8(2):veac093. doi: 10.1093/ve/veac093

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© The Author(s) 2022. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 5. — Maximum likelihood phylogenetic tree of reconstructed haplotypes and consensus sequences for the patient infected with HCMV. Samples of HCMV were taken from PatientA at five time points (T1–T5); reconstructed haplotypes are indicated with H0 and H1. The two haplotypes from the original sample and the consensus sequence from the re-sequenced sample for time point T1 are indicated with a triangle and the corresponding sequences for T3 with a circle. The two viral populations/strains present in the tree are coloured in blue and pink.