Antibodies |
|
Anti-ATF4 |
Cell Signaling |
Cat# 11815; RRID: AB_2616025 |
Anti-ATF6 |
Cell Signaling |
Cat# 65880; RRID: AB_2799696 |
Anti-BARD1 |
Thermo Fisher |
Cat# 22964-1-AP; RRID: AB_2879190 |
Anti-BRCA1 |
Novus Biologicals |
Cat# AF2210; RRID: AB_2067618 |
Anti-BRCA1 |
Santa Cruz Biotech |
Cat# sc-6954; RRID: AB_626761 |
Anti-Cyclophilin B |
Abcam |
Cat# ab 178397 |
Anti-Cyclophilin B |
ThermoFisher |
Cat# MA5-31392; RRID: AB_2787028 |
Anti-DERLIN 1 |
Santa Cruz Biotech |
Cat# sc-293385 |
Anti-DERLIN 1 |
Origene Technologies |
Cat# TA301554 |
Anti-GAPDH |
Cell Signaling |
Cat# 2118; RRID: AB_561053 |
Anti-IRE1 |
Cell Signaling |
Cat# 3294; RRID: AB_823545 |
Anti-IRE1 (phospho) |
Abcam |
Cat# ab124945; RRID: AB_11001365 |
Anti-IRE1 |
Santa Cruz Biotech |
Cat# sc-100772; RRID: AB_1124115 |
Anti-PERK |
Cell Signaling |
Cat# 5683; RRID: AB_10841299 |
Anti-PERK (phospho) |
Abcam |
Cat# ab192591; RRID: AB_2728666 |
Anti-PERK |
Santa Cruz Biotech |
Cat# sc-377400; RRID: AB_2762850 |
Anti-SEL1L |
Santa Cruz Biotech |
Cat# sc-377350 |
Anti-Ubiquitin agarose beads conjugated |
Santa Cruz Biotech |
Cat# sc-8017; RRID: AB_628423 |
Anti-Ubiquitin |
Cell Signaling |
Cat# 43124; RRID: AB_2799235 |
Anti-Flag M2 affinity gel |
Millipore Sigma |
Cat# A2220; RRID: AB_10063035 |
Anti-Strep-tactin |
Neuromics |
Cat# 2-1502-001 |
Anti-GRP94 |
Cell Signaling |
Cat# 2104; RRID: AB_823506 |
Anti-BiP |
Cell Signaling |
Cat# 3177; RRID: AB_2119845 |
Anti-HSP70 |
Cell Signaling |
Cat# 46477; RRID: AB_2687559 |
Anti-eIF2a |
Cell Signaling |
Cat# 5324; RRID:AB_10692650 |
Anti-eIF2a (phospho) |
Cell Signaling |
Cat# 3398; RRID: AB_2096481 |
|
Bacterial and virus strains |
|
CellLight ER GFP, BacMam 2.0 |
Thermo Fisher |
Cat# C105090 |
|
Chemicals, peptides, and recombinant proteins |
|
Tetraphenylethene maleimide |
AIEgen Biotech |
Cat# AIETM TPE-MI |
Concanavalin-A TRITC conjugated |
Thermo Fisher |
Cat# C860 |
Bortezomib |
SelleckChem |
Cat# S1013 |
UBE1 |
R&D Systems |
Cat#E−305-025 |
UBE2J1 |
R&D Systems |
Cat# E2-750 |
BRCA1 |
Active Motif |
Cat# 31113 |
Ubiquitin |
Boston Biochem |
Cat# K-200B |
Cyclosporin A |
SelleckChem |
Cat# S2286 |
NIM811 |
MedChem Express |
Cat# HY-P0025 |
Alisporivir (Debio-025) |
MedChem Express |
Cat# HY-12559 |
|
Critical commercial assays |
|
NE-PER Nuclear and Cytoplasmic Extraction Reagents |
Fisher |
Cat# 78835 |
Quick-RNA Miniprep kit |
Zymo Research |
Cat# R1054 |
SuperScriptTM III First-strand Synthesis SuperMix |
Fisher |
Cat# 11-752-050 |
SYBR Green Supermix |
Bio-Rad |
Cat# 1725121 |
Endoplasmic Reticulum Isolation Kit |
Sigma |
Cat# ER0100 |
|
Deposited data |
|
https://data.mendeley.com/datasets/72gjb45yjv/1 |
|
|
|
Experimental models: Cell lines |
|
MDA-MB-436 BRCA1-def |
ATCC |
Cat# HTB-130; RRID: CVCL_0623 |
MDA-MB-436 BRCA1-replete (BRCA1+) |
Johnson et al., 2013 |
NA |
HCC-1937 BRCA1-def |
ATCC |
Cat# CRL-2336; RRID: CVCL_0290 |
HCC-1937 BRCA1-replete (BRCA1+) |
Zhang et al., 2004 |
NA |
SUM140PT BRCA1-def |
Asterand Biosciences |
Cat# SUM149PT; RRID: CVCL_3422 |
UWB1.289 BRCA1-def |
ATCC |
Cat# CRL-2945; RRID: CVCL_B079 |
UWB1.289 BRCA1 replete ∗BRCA1+) |
ATCC |
Cat# CRL-2946; RRID: CVCL_B078 |
MDA-MB-231 |
ATCC |
Cat# HTB-26; RRID: CVCL_0062 |
MCF7 |
ATCC |
Cat# HTB-22; RRID: CVCL_0031 |
HEK293 |
ATCC |
Cat# CRL-1573; RRID: CVCL_0045 |
MCF10A |
ATCC |
Cat# CRL-10317; RRID: CVCL_0598 |
|
Experimental models: Organisms/strains |
|
Athymic nude mice |
Jackson Laboratories |
Cat# 002019; RRID: IMSR_JAX:002019 |
|
Oligonucleotides |
|
EIF1AK3 |
OriGene |
Cat# HP208096
|
ERN1 |
OriGene |
Cat# HP205316
|
BRCA1 |
OriGene |
Cat# HP210038
|
BARD1 |
OriGene |
Cat# HP200444
|
GAPDH |
OriGene |
Cat# HP205798
|
sp XBP1 forward primer, 5′- TGCTGAGTCCGCAGCAGGTG -3′; reverse primer, 5′- GCTGGCAGGCTCTGGGGAAG -3′ |
NM_001079539.1 |
Fung et al., 2014 |
Total XBP1 forward primer, TTGTCACCCCTCCAGAACATC. reverse primer, TCCAGAATGCCCAACAGGAT |
|
|
Control siRNA |
Dhamarcon |
Cat# D-001810-10-20 |
BRCA1 siRNA |
Dhamarcon |
Cat# sL0034610000 |
CypB siRNA (pooled) |
Santa Cruz Biotech |
Cat# sc-35145 |
CypB-A siRNA |
Santa Cruz Biotech |
Cat# sc-35145a |
CypB-B siRNA |
Santa Cruz Biotech |
Cat# sc-35145b |
CypB 3′UTR siRNA |
Horizon Discovery |
Cat# CTM-710441 |
DERLIN-1 siRNA |
Santa Cruz Biotech |
Cat# sc-60519 |
IRE1 siRNA |
Santa Cruz Biotech |
Cat# sc-40705 |
BiP siRNA |
Santa Cruz Biotech |
Cat# sc-29338 |
GRP94 siRNA |
Santa Cruz Biotech |
Cat# sc-35523 |
HSP70 siRNA |
Santa Cruz Biotech |
Cat# sc-29352 |
PERK siRNA |
Santa Cruz Biotech |
Cat# sc-36213 |
PDI siRNA |
Santa Cruz Biotech |
Cat# sc-36201 |
|
Recombinant DNA |
|
pLenti PGK V5-LUC Neo plasmid |
Addgene |
Cat# w623-2; RRID: Addgene_21471 |
BRCA1/pcDNA3.1 |
Yeung et al., 2008 |
NA |
BARD1 |
Sino Biologicals |
Cat# HG15850-CF |
PERK |
OriGene |
Cat# RC214993 |
IRE1 |
OriGene |
Cat# RC215023 |
PPIB |
OriGene |
Cat# RC203180 |
NSP15 |
OriGene |
Cat# VC100587 |
|
Software and algorithms |
|
ImageJ |
Schneider et al., 2012 |
https://imagej.nih.gov/ij/ |
GraphPad v.7.04 |
Prism software |
https://www.graphpad.com/ |
Living Image v.4.7.3 |
PerkinElmer |
https://www.perkinelmer.com/lab-products-and-services/resources/in-vivo-imaging-software-downloads.html#LivingImage |
FlowJo-Win64–10.8.0 |
FlowJo |
https://www.flowjo.com/solutions/flowjo/downloads |