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. 2022 Nov 19;25(12):105626. doi: 10.1016/j.isci.2022.105626
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-ATF4 Cell Signaling Cat# 11815; RRID: AB_2616025
Anti-ATF6 Cell Signaling Cat# 65880; RRID: AB_2799696
Anti-BARD1 Thermo Fisher Cat# 22964-1-AP; RRID: AB_2879190
Anti-BRCA1 Novus Biologicals Cat# AF2210; RRID: AB_2067618
Anti-BRCA1 Santa Cruz Biotech Cat# sc-6954; RRID: AB_626761
Anti-Cyclophilin B Abcam Cat# ab 178397
Anti-Cyclophilin B ThermoFisher Cat# MA5-31392; RRID: AB_2787028
Anti-DERLIN 1 Santa Cruz Biotech Cat# sc-293385
Anti-DERLIN 1 Origene Technologies Cat# TA301554
Anti-GAPDH Cell Signaling Cat# 2118; RRID: AB_561053
Anti-IRE1 Cell Signaling Cat# 3294; RRID: AB_823545
Anti-IRE1 (phospho) Abcam Cat# ab124945; RRID: AB_11001365
Anti-IRE1 Santa Cruz Biotech Cat# sc-100772; RRID: AB_1124115
Anti-PERK Cell Signaling Cat# 5683; RRID: AB_10841299
Anti-PERK (phospho) Abcam Cat# ab192591; RRID: AB_2728666
Anti-PERK Santa Cruz Biotech Cat# sc-377400; RRID: AB_2762850
Anti-SEL1L Santa Cruz Biotech Cat# sc-377350
Anti-Ubiquitin agarose beads conjugated Santa Cruz Biotech Cat# sc-8017; RRID: AB_628423
Anti-Ubiquitin Cell Signaling Cat# 43124; RRID: AB_2799235
Anti-Flag M2 affinity gel Millipore Sigma Cat# A2220; RRID: AB_10063035
Anti-Strep-tactin Neuromics Cat# 2-1502-001
Anti-GRP94 Cell Signaling Cat# 2104; RRID: AB_823506
Anti-BiP Cell Signaling Cat# 3177; RRID: AB_2119845
Anti-HSP70 Cell Signaling Cat# 46477; RRID: AB_2687559
Anti-eIF2a Cell Signaling Cat# 5324; RRID:AB_10692650
Anti-eIF2a (phospho) Cell Signaling Cat# 3398; RRID: AB_2096481

Bacterial and virus strains

CellLight ER GFP, BacMam 2.0 Thermo Fisher Cat# C105090

Chemicals, peptides, and recombinant proteins

Tetraphenylethene maleimide AIEgen Biotech Cat# AIETM TPE-MI
Concanavalin-A TRITC conjugated Thermo Fisher Cat# C860
Bortezomib SelleckChem Cat# S1013
UBE1 R&D Systems Cat#E−305-025
UBE2J1 R&D Systems Cat# E2-750
BRCA1 Active Motif Cat# 31113
Ubiquitin Boston Biochem Cat# K-200B
Cyclosporin A SelleckChem Cat# S2286
NIM811 MedChem Express Cat# HY-P0025
Alisporivir (Debio-025) MedChem Express Cat# HY-12559

Critical commercial assays

NE-PER Nuclear and Cytoplasmic Extraction Reagents Fisher Cat# 78835
Quick-RNA Miniprep kit Zymo Research Cat# R1054
SuperScriptTM III First-strand Synthesis SuperMix Fisher Cat# 11-752-050
SYBR Green Supermix Bio-Rad Cat# 1725121
Endoplasmic Reticulum Isolation Kit Sigma Cat# ER0100

Deposited data

https://data.mendeley.com/datasets/72gjb45yjv/1

Experimental models: Cell lines

MDA-MB-436 BRCA1-def ATCC Cat# HTB-130; RRID: CVCL_0623
MDA-MB-436 BRCA1-replete (BRCA1+) Johnson et al., 2013 NA
HCC-1937 BRCA1-def ATCC Cat# CRL-2336; RRID: CVCL_0290
HCC-1937 BRCA1-replete (BRCA1+) Zhang et al., 2004 NA
SUM140PT BRCA1-def Asterand Biosciences Cat# SUM149PT; RRID: CVCL_3422
UWB1.289 BRCA1-def ATCC Cat# CRL-2945; RRID: CVCL_B079
UWB1.289 BRCA1 replete ∗BRCA1+) ATCC Cat# CRL-2946; RRID: CVCL_B078
MDA-MB-231 ATCC Cat# HTB-26; RRID: CVCL_0062
MCF7 ATCC Cat# HTB-22; RRID: CVCL_0031
HEK293 ATCC Cat# CRL-1573; RRID: CVCL_0045
MCF10A ATCC Cat# CRL-10317; RRID: CVCL_0598

Experimental models: Organisms/strains

Athymic nude mice Jackson Laboratories Cat# 002019; RRID: IMSR_JAX:002019

Oligonucleotides

EIF1AK3 OriGene Cat# HP208096
ERN1 OriGene Cat# HP205316
BRCA1 OriGene Cat# HP210038
BARD1 OriGene Cat# HP200444
GAPDH OriGene Cat# HP205798
sp XBP1 forward primer, 5′- TGCTGAGTCCGCAGCAGGTG -3′; reverse primer, 5′- GCTGGCAGGCTCTGGGGAAG -3′ NM_001079539.1 Fung et al., 2014
Total XBP1 forward primer, TTGTCACCCCTCCAGAACATC. reverse primer, TCCAGAATGCCCAACAGGAT
Control siRNA Dhamarcon Cat# D-001810-10-20
BRCA1 siRNA Dhamarcon Cat# sL0034610000
CypB siRNA (pooled) Santa Cruz Biotech Cat# sc-35145
CypB-A siRNA Santa Cruz Biotech Cat# sc-35145a
CypB-B siRNA Santa Cruz Biotech Cat# sc-35145b
CypB 3′UTR siRNA Horizon Discovery Cat# CTM-710441
DERLIN-1 siRNA Santa Cruz Biotech Cat# sc-60519
IRE1 siRNA Santa Cruz Biotech Cat# sc-40705
BiP siRNA Santa Cruz Biotech Cat# sc-29338
GRP94 siRNA Santa Cruz Biotech Cat# sc-35523
HSP70 siRNA Santa Cruz Biotech Cat# sc-29352
PERK siRNA Santa Cruz Biotech Cat# sc-36213
PDI siRNA Santa Cruz Biotech Cat# sc-36201

Recombinant DNA

pLenti PGK V5-LUC Neo plasmid Addgene Cat# w623-2; RRID: Addgene_21471
BRCA1/pcDNA3.1 Yeung et al., 2008 NA
BARD1 Sino Biologicals Cat# HG15850-CF
PERK OriGene Cat# RC214993
IRE1 OriGene Cat# RC215023
PPIB OriGene Cat# RC203180
NSP15 OriGene Cat# VC100587

Software and algorithms

ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/
GraphPad v.7.04 Prism software https://www.graphpad.com/
Living Image v.4.7.3 PerkinElmer https://www.perkinelmer.com/lab-products-and-services/resources/in-vivo-imaging-software-downloads.html#LivingImage
FlowJo-Win64–10.8.0 FlowJo https://www.flowjo.com/solutions/flowjo/downloads