|
| Bacterial and virus strains |
|
|
E. coli strain BL21 (DE3) Rosetta2 |
Millipore |
Cat#71400 |
|
| Biological samples |
|
| hP13 ZnF5-WWE1-WWE2 (residues 507–699) WT protein |
This paper |
N/A |
| mP13 ZnF5-WWE1-WWE2 (residues 476–673) WT protein |
This paper |
N/A |
|
| Chemicals, peptides, and recombinant proteins |
|
| PARP1 3rd Zinc finger |
(Langelier et al., 2008) |
N/A |
| WWE of RNF146-GST tagged |
(Wang et al., 2012) |
N/A |
| ADPr |
Sigma-Aldrich |
Cat#A0752 |
| ATP |
Sigma-Aldrich |
Cat#A2383 |
| Iso-ADPr |
Dr. Wenqing Xu, University of Washington |
N/A |
| 18-mer PAR FAM labeled on 2′ end (PAR 2′ FAM) |
(Ando et al., 2019) |
N/A |
| 18-mer PAR FAM labeled on 1″ end (PAR 1″ FAM, AMP-(ADPr)18) |
(Abraham et al., 2020) |
N/A |
| 20-mer PAR FAM labeled on 1″ end (PAR 1″ FAM, AMP-(ADPr)20) |
(Abraham et al., 2020) |
N/A |
| Unlabeled PAR, AMP-(ADPr)1–9
|
This paper |
N/A |
| ATP-FAM labeled on gamma-phosphate |
Jena-Bioscience |
Cat#NU-833-5FM |
|
| Deposited data |
|
| mP13 ZnF5-WWE1-WWE2 (residues 476–673): ATP |
This paper |
PDB: 7SZ2 |
| mP13 ZnF5-WWE1-WWE2 (residues 476–673): ADPr |
This paper |
PDB: 7SZ3 |
|
| Oligonucleotides |
|
| RNA-FAM with a 6-FAM group on the 5′ end |
IDT |
N/A |
| RNA-NB-FAM with a 6-FAM group on the 5′ end |
IDT |
N/A |
|
| Recombinant DNA |
|
| hP13 ZnF5-WWE1-WWE2 (residues 507–699) WT- Gb1 tag |
This paper |
N/A |
| hP13 ZnF5-WWE1-WWE2 (residues 507–699) W611A-Gb1 tag |
This paper |
N/A |
| hP13 ZnF5-WWE1-WWE2 (residues 507–699) R577A-Gb1 tag |
This paper |
N/A |
| hP13 ZnF5-WWE1-WWE2 (residues 507–699) R684A-Gb1 tag |
This paper |
N/A |
| mP13 ZnF5-WWE1-WWE2 (residues 476–673)-SMT |
This paper |
N/A |
| NZAP, hP13 zinc finger 1–4 (residues 1–225) |
This paper |
N/A |
| WWE of RNF146-GST tagged |
(Wang et al., 2012) |
N/A |
|
| Software and algorithms |
|
|
|
| ASTRA 6.1.6.5 |
Wyatt technology |
https://www.wyatt.com/products/software/astra.html
|
| FOXS |
(Schneidman-Duhovny et al., 2013) |
https://modbase.compbio.ucsf.edu/foxs
|
| CRYSOL |
(Svergun et al., 1995) |
https://www.embl-hamburg.de/biosaxs/manuals/crysol.html
|
| BioXTAS RAW |
(Hopkins et al., 2017) |
https://bioxtas-raw.readthedocs.io/
|
| DENSS |
(Grant, 2018) |
https://www.tdgrant.com/denss/
|
| XDS |
(Kabsch, 2010) |
https://xds.mr.mpg.de
|
| COOT |
(Emsley et al., 2010) |
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
|
| PHENIX |
(Adams et al., 2010) |
http://www.phenix-online.org
|
| MATLAB |
MathWorks |
https://www.mathworks.com/products/matlab.htm
|