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. 2022 Nov 16;25(12):105603. doi: 10.1016/j.isci.2022.105603
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-CD45-Pacific Blue BioLegend Cat#103126; RRID:AB_493535
Anti-CD31-Pacific Blue BioLegend Cat#102422; RRID:AB_10612926
Anti-TER-119-Pacific Blue BioLegend Cat#116232; RRID:AB_2251160
Anti-CD24-APC eBioscience Cat#17-0242-82; RRID:AB_10870773
Anti-ICAM1-PE-CY7 BioLegend Cat#116122; RRID:AB_2715950
Anti-NCAM-PE R&D Systems Cat#FAB7820P; AB_2924964
Anti-DLL3 Invitrogen Cat#PA5-23448; RRID:AB_2540948
Anti-HES1 Cell Signaling Technology Cat#11988; RRID:AB_2728766
Anti-hexahistidine Cell Signaling Technology Cat#12698S; RRID:AB_2744546
Anti-Rabbit-AF488 Invitrogen Cat#A11008; RRID:AB_143165

Bacterial and virus strains

BL21 (DE3) electrocompetent cells SigmaAldrich CMC0016
Endura competent cells Lucigen 60240-2

Chemicals, peptides, and recombinant proteins

RPMI-1640 Millipore Sigma R0883
DMEM High-Glucose medium Hyclone SH30243.01
Bovine Growth Serum Hyclone SH3054103HI
Penicillin-streptomycin-glutamine Gibco 10378016
Ampicillin sodium salt SigmaAldrich A0166
IPTG Gold Biotechnology I2481C5
B-PER Thermo Fisher Scientific 90084
Lysozyme SigmaAldrich L4919
DNase I Roche 10104159001
Ni-NTA agarose Qiagen 30210
Centrifugal filters Millipore UFC801024
AF680 succinimidyl ester Thermo Fisher Scientific A20008
Albumin from bovine serum SigmaAldrich A9647-100G
Polyethylenimine Polysciences 23966-1
Histo-Clear National Diagnostics HS-200
Antigen unmasking solution Vector Laboratories H-3300
Hematoxylin SigmaAldrich HHS32-1L
L-15 medium Sigma L1518
Collagenase I Sigma C0130
Collagenase II Sigma 6885
Collagenase IV Sigma 5138
Elastase Worthington LS002292
RBC lysis buffer eBioscience 00-4333-57

Critical commercial assays

mmPRESS®HRP Horse Anti-Rabbit IgG Polymer Detection Kit Vector Laboratories MP-7401
ImmPRESS® Excel Amplified Polymer Staining Anti-Rabbit IgG Peroxidase Kit Vector Laboratories MP-7601
DAB substrate kit Vector Laboratories SK-4100
Mouse Direct PCR kit Bimake B40013

Deposited data

MATLAB code for modeling GitHub https://github.com/junwkim1/DLL3_lateral_inhibition_2022

Experimental models: Cell lines

NCI-H82 ATCC NCI-H82
NCI-H146 ATCC NCI-H146
NCI-H524 ATCC NCI-H524
HEK-293T ATCC 293T
KP11B6 Julien Sage Laboratory Park et al., 201163
HES1pos, HES1neg cells Julien Sage Laboratory Lim et al., 201712

Experimental models: Organisms/strains

Mouse: NOD.Cg-PrkdcscidIl2rgtm1Wjl/SzJ The Jackson Laboratory Cat#005557
RPR2 model Julien Sage Laboratory Park et al., 201163
Rosa26LSL-Dll3 GenOway genOway/MNO/ABB55-Rosa26_Dll3
Rosa26LSL-Luc Julien Sage Laboratory Jahchan et al., 201645

Oligonucleotides

See Table S2

Recombinant DNA

pCDH-CMV-MCS-EF1-puro System Biosciences CD510B-1

Software and algorithms

GraphPad Prism GraphPad https://www.graphpad.com/
FlowJo FlowJo https://www.flowjo.com/
MATLAB MathWorks https://www.mathworks.com/
BZ-X Viewer 1.3.1.1 Keyence https://www.keyence.com/products/microscope/fluorescence-microscope/bz-x700/
BZ-X Analyzer 1.4.0.1 Keyence https://www.keyence.com/products/microscope/fluorescence-microscope/bz-x700/