Antibodies |
|
Anti-CD45-Pacific Blue |
BioLegend |
Cat#103126; RRID:AB_493535
|
Anti-CD31-Pacific Blue |
BioLegend |
Cat#102422; RRID:AB_10612926
|
Anti-TER-119-Pacific Blue |
BioLegend |
Cat#116232; RRID:AB_2251160
|
Anti-CD24-APC |
eBioscience |
Cat#17-0242-82; RRID:AB_10870773
|
Anti-ICAM1-PE-CY7 |
BioLegend |
Cat#116122; RRID:AB_2715950
|
Anti-NCAM-PE |
R&D Systems |
Cat#FAB7820P; AB_2924964 |
Anti-DLL3 |
Invitrogen |
Cat#PA5-23448; RRID:AB_2540948
|
Anti-HES1 |
Cell Signaling Technology |
Cat#11988; RRID:AB_2728766
|
Anti-hexahistidine |
Cell Signaling Technology |
Cat#12698S; RRID:AB_2744546
|
Anti-Rabbit-AF488 |
Invitrogen |
Cat#A11008; RRID:AB_143165
|
|
Bacterial and virus strains |
|
BL21 (DE3) electrocompetent cells |
SigmaAldrich |
CMC0016 |
Endura competent cells |
Lucigen |
60240-2 |
|
Chemicals, peptides, and recombinant proteins |
|
RPMI-1640 |
Millipore Sigma |
R0883 |
DMEM High-Glucose medium |
Hyclone |
SH30243.01 |
Bovine Growth Serum |
Hyclone |
SH3054103HI |
Penicillin-streptomycin-glutamine |
Gibco |
10378016 |
Ampicillin sodium salt |
SigmaAldrich |
A0166 |
IPTG |
Gold Biotechnology |
I2481C5 |
B-PER |
Thermo Fisher Scientific |
90084 |
Lysozyme |
SigmaAldrich |
L4919 |
DNase I |
Roche |
10104159001 |
Ni-NTA agarose |
Qiagen |
30210 |
Centrifugal filters |
Millipore |
UFC801024 |
AF680 succinimidyl ester |
Thermo Fisher Scientific |
A20008 |
Albumin from bovine serum |
SigmaAldrich |
A9647-100G |
Polyethylenimine |
Polysciences |
23966-1 |
Histo-Clear |
National Diagnostics |
HS-200 |
Antigen unmasking solution |
Vector Laboratories |
H-3300 |
Hematoxylin |
SigmaAldrich |
HHS32-1L |
L-15 medium |
Sigma |
L1518 |
Collagenase I |
Sigma |
C0130 |
Collagenase II |
Sigma |
6885 |
Collagenase IV |
Sigma |
5138 |
Elastase |
Worthington |
LS002292 |
RBC lysis buffer |
eBioscience |
00-4333-57 |
|
Critical commercial assays |
|
mmPRESS®HRP Horse Anti-Rabbit IgG Polymer Detection Kit |
Vector Laboratories |
MP-7401 |
ImmPRESS® Excel Amplified Polymer Staining Anti-Rabbit IgG Peroxidase Kit |
Vector Laboratories |
MP-7601 |
DAB substrate kit |
Vector Laboratories |
SK-4100 |
Mouse Direct PCR kit |
Bimake |
B40013 |
|
Deposited data |
|
MATLAB code for modeling |
GitHub |
https://github.com/junwkim1/DLL3_lateral_inhibition_2022 |
|
Experimental models: Cell lines |
|
NCI-H82 |
ATCC |
NCI-H82 |
NCI-H146 |
ATCC |
NCI-H146 |
NCI-H524 |
ATCC |
NCI-H524 |
HEK-293T |
ATCC |
293T |
KP11B6 |
Julien Sage Laboratory |
Park et al., 201163
|
HES1pos, HES1neg cells |
Julien Sage Laboratory |
Lim et al., 201712
|
|
Experimental models: Organisms/strains |
|
Mouse: NOD.Cg-PrkdcscidIl2rgtm1Wjl/SzJ |
The Jackson Laboratory |
Cat#005557 |
RPR2 model |
Julien Sage Laboratory |
Park et al., 201163
|
Rosa26LSL-Dll3
|
GenOway |
genOway/MNO/ABB55-Rosa26_Dll3 |
Rosa26LSL-Luc
|
Julien Sage Laboratory |
Jahchan et al., 201645
|
|
Oligonucleotides |
|
See Table S2
|
|
|
|
Recombinant DNA |
|
pCDH-CMV-MCS-EF1-puro |
System Biosciences |
CD510B-1 |
|
Software and algorithms |
|
GraphPad Prism |
GraphPad |
https://www.graphpad.com/ |
FlowJo |
FlowJo |
https://www.flowjo.com/ |
MATLAB |
MathWorks |
https://www.mathworks.com/ |
BZ-X Viewer 1.3.1.1 |
Keyence |
https://www.keyence.com/products/microscope/fluorescence-microscope/bz-x700/ |
BZ-X Analyzer 1.4.0.1 |
Keyence |
https://www.keyence.com/products/microscope/fluorescence-microscope/bz-x700/ |