Table 2.

iVirus-powered apps on KBase and CyVerse.

App name	Virus ecogenomics processing stage	Availability	iVirus Version	Reference
vConTACTa	Virus Classification	CyVerse	1, 2	Bolduc [45]
vConTACT-PCs	Virus Classification	CyVerse	1, 2	Bolduc [34]
vConTACT2	Virus Classification	CyVerse/KBase	2	Jang [30]
BowtieBatch	Read mapping	CyVerse	1, 2	Bolduc [34]
Read2RefMapper	Read mapping	CyVerse	1, 2	Bolduc et al. [45]
VirSorter	Virus Identification	CyVerse/KBase	1, 2	Roux [44]
VirSorter 2	Virus Identification	CyVerse	2	Guo [47]
PCPipe	Protein clustering	CyVerse	1, 2	Hurwitz [46]
Fizkin	Community profiling	CyVerse	1, 2	Hurwitz [46]
CheckV	Virus analysis	CyVerse	2	Nayfach [60]
MArVD	Virus identification	CyVerse	2	Vik [53]
MArVD2	Virus identification	In development	2	Vik [54]
Cenote-Taker2	Annotation	CyVerse	2	Tisza [55]
MetaPop	Population genetics	CyVerse	2	Gregory [22]
VirMatcher	Virus-Host prediction	KBase	2	Gregory [63]
DRAM-v	AMG identification and annotation	KBase	2	Shaffer [57]
WIsH	Virus-Host prediction	CyVerse	2	Galiez [59]
DeepVirFinder	Virus Identification	CyVerse	2	Ren [48]
VIBRANTb	Virus Identification	CyVerse	2	Kieft [51]
MARVEL	Virus Identification	CyVerse	2	Amgarten [49]

^avConTACT is comprised of several apps, including *-Gene2Genome, and *-prePCs.

^bNot integrated by the iVirus team, but included due to its relevance for virus ecogenomics.