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. 2022 Dec 6;21:55. doi: 10.1186/s12941-022-00543-1

Table 1.

RT-PCR targets and their primers for detecting Tropheryma whipplei in this study

Target Primer sequence (5′–3′) Product size, bp Limit of detection, copies/μL Tm, °C
Forward Reverse
16S–23S rRNA ITS CCGGTGACTTAACCTTTTTGGAGA TCCCGAGGCTTATCGCAGATTG 489 190 84
rpoB CTCGGTGTTGATGTTGATCCAA GCACCGCAACCTCGGAGAAA 109 1830 63
hsp65 CGCGAAAGAGGTTGAGACTG ACATCTTCAGCAATGATAAGAAGTT 357 26 82
Dig15 TGTTTTGTACTGCTTGTAACAGGATCT GATGATAGGAGGGATAGAGCAGGA 155 599 74

ITS intergenic spacer, RT-PCR real-time PCR, Tm melting temperature