Table 3.
Stable QTL for plant height, spike length and spike compactness in the PG-RIL population
| Trait | QTL | Env | Markers Interval | Genetic Interval (cM) | PVE% | Add | References |
|---|---|---|---|---|---|---|---|
| PH | QPh.cas-1A.1 | E1 |
AX-109816727 –AX-109832643 |
2.932–5.047 | 6.730 | -3.482 | |
| E2 | 3.732 | -2.609 | |||||
| E3 | 10.230 | -3.632 | |||||
| E4 | 8.697 | -3.947 | |||||
| BLUP | 7.981 | -2.945 | |||||
| QPh.cas-5A.3 | E2 |
AX-109936570 –AX-110418750 |
83.758–85.001 | 17.901 | 3.652 | ||
| E3 | 9.665 | 2.295 | |||||
| BLUP | 8.381 | 1.934 | |||||
| QPh.cas-5A.4 | E1 |
AX-109514581 –AX-111518796 |
167.560–169.057 | 4.307 | 1.851 | ||
| E2 | 3.656 | 1.629 | |||||
| E3 | 3.597 | 1.381 | |||||
| BLUP | 4.596 | 1.413 | |||||
| QPh.cas-6A | E1 |
AX-108766577 –AX-111257815 |
63.966–65.160 | 9.977 | 2.814 | ||
| E3 | 11.401 | 2.463 | |||||
| E4 | 17.037 | 3.439 | |||||
| BLUP | 13.248 | 2.397 | |||||
| QPh.cas-7D | E1 |
AX-109320176 –AX-111547071 |
118.725–119.787 | 7.262 | 2.402 | [5] | |
| E3 | 9.459 | 2.238 | |||||
| E4 | 9.721 | 2.600 | |||||
| BLUP | 8.421 | 1.912 | |||||
| SL | QSl.cas-2B.2 | E1 |
AX-110929441 –AX-110103130 |
134.726–147.365 | 7.054 | 0.394 | [32] |
| E2 | 3.590 | 0.213 | |||||
| E3 | 2.989 | 0.273 | |||||
| E4 | 7.250 | 0.323 | |||||
| BLUP | 4.134 | 0.222 | |||||
| QSl.cas-2D.2 | E1 |
AX-110462142 –AX-110168677 |
122.055–132.439 | 3.786 | -0.292 | [33] | |
| E2 | 7.479 | -0.310 | |||||
| E3 | 27.288 | -0.830 | |||||
| E4 | 5.516 | -0.284 | |||||
| BLUP | 10.051 | -0.351 | |||||
| QSl.cas-4A.1 | E1 |
AX-109449795 –AX-111102921 |
0.421–2.028 | 3.603 | -0.282 | ||
| E3 | 1.237 | -0.176 | |||||
| BLUP | 5.141 | -0.248 | |||||
| QSl.cas-6B.2 | E1 |
AX-108874447 –AX-108763535 |
112.768–121.387 | 5.577 | 0.351 | [6, 34] | |
| E2 | 22.939 | 0.543 | |||||
| E3 | 13.152 | 0.576 | |||||
| E4 | 25.676 | 0.613 | |||||
| BLUP | 18.651 | 0.476 | |||||
| QSl.cas-6D.2 | E2 |
AX-111480830 –AX-111463829 |
76.375–82.772 | 5.455 | -0.270 | ||
| E4 | 5.015 | -0.276 | |||||
| QSl.cas-6D.3 | E1 |
AX-111694627 –AX-109997558 |
89.948–93.275 | 3.488 | -0.288 | ||
| E3 | 4.364 | -0.343 | |||||
| SCN | QScn.cas-2B.2 | E1 |
AX-110929441 –AX-110103130 |
134.726–147.365 | 11.396 | -0.102 | |
| E3 | 5.893 | -0.068 | |||||
| E4 | 6.972 | -0.076 | |||||
| BLUP | 3.913 | -0.050 | |||||
| QScn.cas-3D.1 | E3 |
AX-111064903 –AX-108788717 |
58.995–64.259 | 5.474 | 0.066 | ||
| E4 | 4.505 | 0.061 | |||||
| BLUP | 5.7222 | 0.061 | |||||
| QScn.cas-3D.2 | E1 |
AX-110834607 –AX-89337262 |
82.759–92.192 | 9.8091 | 0.094 | [35] | |
| E3 | 4.3772 | 0.059 | |||||
| E4 | 5.2069 | 0.066 | |||||
| BLUP | 4.0048 | 0.051 | |||||
| QScn.cas-4D.1 | E1 |
AX-109408826 –AX-108728919 |
77.985–82.964 | 5.080 | 0.068 | [32, 36] | |
| E3 | 3.605 | 0.053 | |||||
| QScn.cas-5D | E3 |
AX-111555981 –AX-111262507 |
130.600–136.499 | 2.6319 | 0.046 | [32] | |
| E4 | 5.7563 | 0.069 | |||||
| BLUP | 5.0313 | 0.057 | |||||
| QScn.cas-6A.1 | E3 |
AX-111504079 –AX-109355289 |
50.353–54.925 | 4.656 | -0.062 | [32] | |
| E4 | 3.5724 | -0.056 | |||||
| QScn.cas-6A.2 | E1 |
AX-108835689 –AX-111257815 |
62.873–65.160 | 6.1232 | -0.075 | ||
| E2 | 6.9682 | -0.072 | |||||
| QScn.cas-6B | E1 |
AX-111236313 –AX-108763535 |
118.069–121.387 | 11.427 | -0.101 | ||
| E2 | 20.0194 | -0.123 | |||||
| E3 | 21.9433 | -0.133 | |||||
| E4 | 20.8836 | -0.134 | |||||
| BLUP | 24.213 | -0.126 | |||||
| QScn.cas-6D.2 | E2 |
AX-111694627 –AX-109997558 |
89.948–93.275 | 8.227 | 0.081 | [37] | |
| E3 | 9.2452 | 0.089 | |||||
| E4 | 11.5314 | 0.103 | |||||
| BLUP | 6.1995 | 0.066 | |||||
| QScn.cas-7A | E1 |
AX-108786753 –AX-108792313 |
98.942–101.378 | 6.5443 | -0.077 | ||
| E2 | 7.4825 | -0.075 | |||||
| E3 | 3.4924 | -0.053 | |||||
| BLUP | 3.8594 | -0.050 |
Env Environments, BLUP Best linear unbiased predictors, PVE Phenotypic variance explained, Add Additive effect