Table 5.
Unconditional and conditional stable QTL for spike compactness in wheat
| QTL | Marker Interval | Env | Unconditional QTL | Conditional QTL | ||||
|---|---|---|---|---|---|---|---|---|
| SCN | SCN|SL | |||||||
| LOD | PVE (%) | Add | LOD | PVE (%) | Add | |||
| QScn.cas-1B.1 | AX-94442624–AX-89407680 | E3 | 4.735 | 4.082 | 0.227 | |||
| QScn.cas-1B.2 | AX-108765529–AX-108864392 | E3 | 17.821 | 12.758 | 0.072 | |||
| QScn.cas-1B.3 | AX-110587463–AX-109849695 | E3 | 22.049 | 16.668 | -0.082 | |||
| QScn.cas-1D | AX-108865120–AX-109382139 | E3 | 5.093 | 2.923 | 0.200 | |||
| QScn.cas-2A.1 | AX-109348712–AX-110055170 | E3 | 3.477 | 2.425 | -0.044 | |||
| QScn.cas-2A.2 | AX-95021645–AX-111620705 | E4 | 3.396 | 2.554 | -0.046 | |||
| QScn.cas-2A.3 | AX-111702958–AX-108747720 | E3 | 2.691 | 5.759 | -0.034 | |||
| QScn.cas-2B.1 | AX-111462859–AX-108840615 | E3 | 3.159 | -0.050 | ||||
| QScn.cas-2B.2 | AX-110929441–AX-110103130 | E1 | 8.816 | 11.396 | -0.102 | |||
| E3 | 7.695 | 5.893 | -0.068 | |||||
| E4 | 8.677 | 6.972 | -0.076 | |||||
| B | 5.464 | 3.913 | -0.050 | |||||
| QScn.cas-2D | AX-109316209–AX-110168677 | E4 | 3.452 | 2.519 | 0.046 | |||
| B | 5.745 | 4.413 | 0.054 | |||||
| QScn.cas-3A.1 | AX-110507851–AX-109304291 | B | 6.600 | 5.008 | 0.057 | |||
| QScn.cas-3A.2 | AX-94476859–AX-109853943 | B | 3.254 | 5.074 | -0.028 | |||
| QScn.cas-3D.1 | AX-111064903–AX-108788717 | E1 | 4.876 | 0.906 | 0.055 | |||
| E2 | 6.659 | 13.387 | 0.052 | |||||
| E3 | 7.414 | 5.474 | 0.066 | 12.758 | 8.412 | 0.058 | ||
| E4 | 5.864 | 4.505 | 0.061 | 3.492 | 10.151 | 0.041 | ||
| B | 7.398 | 5.722 | 0.061 | 10.820 | 18.348 | 0.054 | ||
| QScn.cas-3D.2 | AX-110834607–AX-89337262 | E1 | 7.255 | 9.809 | 0.094 | 3.393 | 0.649 | 0.047 |
| E3 | 5.611 | 4.377 | 0.059 | |||||
| E4 | 6.313 | 5.207 | 0.066 | |||||
| B | 5.077 | 4.005 | 0.051 | |||||
| QScn.cas-4A | AX-109449795–AX-111102921 | B | 5.924 | 4.510 | 0.054 | |||
| QScn.cas-4D.1 | AX-109408826–AX-108728919 | E1 | 4.258 | 5.080 | 0.068 | |||
| E3 | 4.925 | 3.605 | 0.053 | |||||
| QScn.cas-4D.2 | AX-111684216–AX-95658321 | E2 | 3.138 | 4.007 | 0.055 | |||
| QScn.cas-5A | AX-108754134–AX-109324435 | B | 3.253 | 2.418 | -0.040 | |||
| QScn.cas-5D | AX-111555981–AX-111262507 | E3 | 3.587 | 2.632 | 0.046 | |||
| E4 | 7.368 | 5.756 | 0.069 | |||||
| B | 6.467 | 5.031 | 0.057 | |||||
| QScn.cas-6A.1 | AX-111504079–AX-109355289 | E3 | 6.208 | 4.656 | -0.062 | |||
| E4 | 4.638 | 3.572 | -0.056 | |||||
| QScn.cas-6A.2 | AX-108835689–AX-111257815 | E1 | 5.059 | 6.123 | -0.075 | 62.774 | 27.224 | -0.302 |
| E2 | 5.401 | 6.968 | -0.072 | 5.409 | 3.245 | -0.036 | ||
| B | 6.056 | 9.916 | -0.040 | |||||
| QScn.cas-6B.1 | AX-111530060–AX-111466686 | B | 2.511 | 3.892 | -0.025 | |||
| QScn.cas-6B | AX-111236313–AX-108763535 | E1 | 8.538 | 11.427 | -0.101 | |||
| E2 | 13.728 | 20.019 | -0.123 | |||||
| E3 | 23.616 | 21.943 | -0.133 | |||||
| E4 | 21.720 | 20.884 | -0.134 | |||||
| B | 24.495 | 24.213 | -0.126 | |||||
| QScn.cas-6D.1 | AX-110596748–AX-109412721 | E1 | 5.763 | 7.164 | 0.081 | |||
| B | 4.049 | 3.068 | 0.045 | |||||
| QScn.cas-6D.2 | AX-111694627–AX-109997558 | E2 | 6.181 | 8.227 | 0.081 | |||
| E3 | 11.629 | 9.245 | 0.089 | |||||
| E4 | 13.530 | 11.531 | 0.103 | |||||
| B | 7.801 | 6.200 | 0.066 | |||||
| QScn.cas-7A.1 | AX-108761450–AX-109338226 | E3 | 4.340 | 2.623 | 0.033 | |||
| QScn.cas-7A | AX-108786753–AX-108792313 | E1 | 5.280 | 6.544 | -0.077 | |||
| E2 | 5.761 | 7.483 | -0.075 | |||||
| E3 | 4.905 | 3.492 | -0.053 | |||||
| B | 5.021 | 3.859 | -0.050 | |||||
| QScn.cas-7D.1 | AX-109352158–AX-110574768 | E3 | 3.592 | 2.100 | 0.030 | |||
| QScn.cas-7D.2 | AX-108803885–AX-110969403 | E3 | 6.446 | 3.996 | -0.040 | |||
(+) indicates that the allele is derived from the P3228, (−) indicates that the allele is derived from the G8901. E and numerals in parentheses indicate the environment in which the QTL was detected and the percentage of phenotypic variance explained (PVE) by the additive effects of the mapped QTL, respectively