Table 2.

Numbers and total length of scaffolds that determined the possible donor parent

Donora	Number of scaffolds	Total length
		bp	% to VSMph_r1.0
Akitsu high confidence	183	113,484,905	11.3
Akitsu low confidence	560	240,237,600	23.9
Akitsu total	743	353,722,505	35.2
Hakunan high confidence	516	185,520,858	18.5
Hakunan low confidence	454	216,512,960	21.5
Hakunan total	970	402,033,818	40
Undetermined	690	155,251,616	15.5
Not investigatedb	13,247	93,709,622	9.3

^aThe donor of each scaffold was estimated based on the percentages of allele types of parental genomes under the following conditions:

Donor = Akitsu 21, Hetero ≥ 70% on the Akitsu 21 genome, Alt Homo ≥ 70% on the ‘Hakunan’ genome.

Donor = ‘Hakunan’, Alt Homo ≥ 70% on the Akitsu 21 genome, Ref Homo ≥ 70% on the ‘Hakunan’ genome.

High confidence: The donor was estimated by both parental genomes, and the results matched.

Low confidence: Either of the parental genomes determined the donor, while another parental genome gave an ‘undetermined’ result.

^bSequences excluded from investigation because no variants were identified.