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. 2022 Dec 7;612(7939):283–291. doi: 10.1038/s41586-022-05453-y

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 2 — Reads have been merged from all layers and sites. The green numbers on each edge represent the number of supporting (+) SNPs, whereas the red numbers indicate conflicting (−) SNPs in the ancient Leporidae environmental mitochondrial genome overlapping the reference SNPs assigned to the respective edge. There is a clear placement for the ancient Leporidae environmental mitochondrial genome on the edge marked +2, basal to the extant Lepus lineage.