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. 2022 Nov 4;14(12):evac161. doi: 10.1093/gbe/evac161

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© The Author(s) 2022. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 3. — SARSr-CoV IDPlot analysis. (A) IDPlot analysis of SARS-CoV-2-like SARSr-CoVs with color-coded dashed lines defining divergent regions arising from recombination events with ancestral viruses. (B) ML tree of the RdRp-encoding region of SARS-2-like and other SARSr-CoVs showing close relationship between the SARS-CoV-2-like viruses. (C) ML tree of PangolinCoV/GD19 RR1 (which overlaps with BtCoV/RmYN02 RR1) showing different topology than the RdRp tree. (D) Schematic of spike proteins indicating divergent regions and nucleotide identity to the reference sequence and closest related sequence in GenBank. (E) ML tree of ORf8 showing that RmYN02 Orf8 is a divergent member of the SARS-CoV-like Orf8 branch.