Figure 5.
Benchmark test for accelerating simulations in IsRNA2 through parallel central processing unit (CPU) threads and graphics processing unit (GPU) computing. For RNA molecules with different sizes (PDB ids are labeled), performances were tested on single CPU thread (1xCPU), two CPU threads (2xCPU), and GPU accelerator (CPU+GPU). The tested CPU is Intel(R) Core(TM) i9-9900K 3.6GHz and GPU is GeForce RTX 2080 Ti.