Table 2.
Epitope name a | Primary sequence | Context |
Chikungunya b |
STKDNFNVYKATRPYLAH (Kam et al., 2012) |
Human infectious disease |
Zika |
DAHAKRQTVVVLGSQEGAV (Shawan et al., 2014) |
|
OVA |
SIINFEKL (Villegas‐Mendez et al., 2010) |
Human melanoma model |
Newcastle |
PDEQDYQIRMAKS (Cho et al., 2008) |
Livestock infectious disease epitope |
Gumboro |
MPKTHNSGRSNVDGGGSTLHLPHLWRPLSGGGSHNAKYVSAESWGGSHPDSIHPFLASPGGGSDTLHGHGFTNWF (Wang et al., 2007) |
|
Extended |
ENLFYQSEQGGGGAGGGNNSGSGAEENSNAAAAAMQPVEDMNDHAIRGDTFATRAEEKRAEAEAAAEAAAPAAQPEVEKPQGGSGGSGGAKIEAATAAAEAKANIVASDSTRVANAGEVRGDNFAPTPVPTAESLLADVSEGTDGGSGGSGGTETTTLAVAEETSEDDDITRGDTYITEKQKREAAAAEVKK (Zubieta, Schoehn, Chroboczek, & Cusack, 2005) |
For testing (the combined RGD loop sequences from human Adenovirus serotypes Ad2, Ad11 and Ad3, disassociated via flexible linker sequences) |
The given amino acids in the table above include the epitope flanked by linker residues GGSG (N‐term) and GSGG (C‐term) for overall flexibility.
Chikungunya epitope consists of an N‐terminal linker residue GGSG, and a TEV protease cleavage site right before the epitope (GGSGENLYFQ'S…, and the TEV recognition site underlined, S as the first serine in epitope sequence).