Table 6.
Detected MTA for SCG across multiple environments and the related chromosome (Chr), position in base pairs (bp), number of alleles, significance level (p value) and the genetic contribution (R2%)
| Marker | Chr | Position (bp) | Number of alleles | p value | R2% |
|---|---|---|---|---|---|
| 4A_711017464_711020153 | 4A | 711,017,464–711,020,153 | 3 | 5.02E−10 | 3.0 |
| 5D_550233101_550269437 | 5D | 550,233,101–550,269,437 | 3 | 1.15E−07 | 2.8 |
| 1D_493762451_493762578 | 1D | 493,762,451–493,762,578 | 2 | 1.12E−08 | 2.4 |
| 5A_50720731_50794095 | 5A | 50,720,731–50,794,095 | 5 | 9.18E−08 | 1.9 |
| 6D_489372836_489372970 | 6D | 489,372,836–489,372,970 | 3 | 3.56E−08 | 1.9 |
| 2B_755415035_755415065 | 2B | 755,415,035–755,415,065 | 3 | 3.10E−07 | 1.9 |
| 3A_688991451_688994636 | 3A | 688,991,451–688,994,636 | 3 | 2.66E−05 | 1.8 |
| 7B_602841854_602841896 | 7B | 602,841,854–602,841,896 | 3 | 2.09E−05 | 1.7 |
| 1B_314905740_314905753 | 1B | 314,905,740–314,905,753 | 2 | 1.37E−06 | 1.7 |
| 3A_730943_731111 | 3A | 7309,43–731,111 | 2 | 2.24E−06 | 1.6 |
| 3B_384909506_384909593 | 3B | 384,909,506–384,909,593 | 4 | 3.15E−04 | 1.6 |
| 6B_695978335_695980151 | 6B | 695,978,335–695,980,151 | 5 | 2.82E−05 | 1.5 |
| 2D_13900212_13995826 | 2D | 13,900,212–13,995,826 | 2 | 2.50E−05 | 1.3 |
| 3D_1283757_1283901a | 3D | 1,283,757–1,283,901 | 3 | 3.12E−04 | 1.3 |
| 1B_557926149_557926283 | 1B | 557,926,149–557,926,283 | 5 | 3.08E−05 | 1.2 |
| 3A_654050880 | 3A | 654,050,880 | 2 | 9.07E−04 | 1.2 |
| 3A_559323958 | 3A | 559,323,958 | 2 | 5.36E−04 | 1.1 |
| 4A_746323361 | 4A | 746,323,361 | 3 | 1.08E−04 | 1.1 |
| 2B_430316549_430316565 | 2B | 430,316,549–430,316,565 | 2 | 3.24E−05 | 1.1 |
| 5A_120042044 | 5A | 120,042,044 | 2 | 5.16E−06 | 1.1 |
| 3B_27074464_27074547 | 3B | 27,074,464–27,074,547 | 2 | 2.79E−05 | 1.0 |
| 3A_14346502 | 3A | 14,346,502 | 2 | 6.62E−04 | 0.9 |
| 7A_6662829_6662857 | 7A | 6,662,829–6,662,857 | 3 | 1.43E−04 | 0.9 |
| 7A_82083717_82085053 | 7A | 82,083,717–82,085,053 | 6 | 6.99E−05 | 0.9 |
| 7B_650430264_650432400 | 7B | 650,430,264–650,432,400 | 6 | 4.57E−04 | 0.9 |
| 3B_12798505_12798582 | 3B | 12,798,505–12,798,582 | 4 | 2.94E−04 | 0.8 |
| 2A_24435790 | 2A | 24,435,790 | 2 | 1.72E−04 | 0.8 |
| 7A_715229696_715229780 | 7A | 715,229,696–715,229,780 | 2 | 2.23E−04 | 0.8 |
| 7A_697487664_697584845 | 7A | 697,487,664–697,584,845 | 4 | 1.46E−04 | 0.8 |
| 1B_517466055 | 1B | 517,466,055 | 2 | 4.99E−04 | 0.8 |
| 3A_722869171_722876258 | 3A | 722,869,171–722,876,258 | 4 | 8.33E−04 | 0.7 |
| 2A_715219861 | 2A | 715,219,861 | 2 | 4.60E−04 | 0.7 |
| 5B_464573000_464573015 | 5B | 464,573,000–464,573,015 | 2 | 7.77E−04 | 0.6 |
Positions are based on the IWGSC genome assembly of Chinese Spring version 2.0. For markers in a linkage disequilibrium block the position is given as a range. QTL are sorted by R2%
a MTA collocated with HW