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. 2022 Nov 24;11(23):3223. doi: 10.3390/plants11233223
lncRNA long non-coding RNA
lincRNA intergenic lncRNA
lncNAT long non-coding natural antisense transcript
miRNA microRNA
ceRNA competing endogenous RNA
ssRNA-seq strand-specific RNA sequencing
AAT artificial aging treatment
DEL differentially expressed lncRNA
DEG differentially expressed mRNA
RACE rapid-amplification of cDNA ends
LTR long terminal repeated
S50 aged seeds (50% germination percentage)
S96 new seeds (96% germination percentage)
ORF open reading frame
FPKM fragments per kilobase of exons per million fragments mapped
PFAM database of protein families
CPC coding potential calculator
KEGG Kyoto Encyclopedia of Genes and Genomes
PCC pearson correlation coefficient
GO Gene Ontology
NER nucleotide excision repair
qPCR Quantitative Real-time PCR
KOBAS KEGG Orthology-Based Annotation System
ROS reactive oxygen species
ABA abscisic acid
GA gibberellin