| DFCP1 | double FYVE domain–containing protein 1 |
| ULK | Unc51-like kinase |
| PI3K | phosphatidylinositol 3-kinase |
| LC3 | microtubule-associated protein light chain 3 |
| FIP200 | FAK family kinase-interacting protein of 200 kD |
| VAPA/VAPB | (Vesicle-associated membrane protein)-associated Protein A/B |
| VPS34 | vacuolar protein sorting 34 |
| IMATs | isolation membrane-associated tubular structures |
| ERGIC | ER-Golgi intermediate compartment |
| ESCRT | endosomal sorting complexes required for transport |
| SNARE | endosomal sorting complexes required for transport |
| HOPS | homotypic fusion and protein sorting |
| AMPK | Adenosine 5‘-monophosphate (AMP)-activated protein kinase |
| AKT | Protein kinase B |
| mTOR | mammalian target of rapamycin |
| MAPK | mitogen-activated protein kinase |
| PINK1 | PTEN-induced kinase 1 |
| Keap1 | Kelch-like ECH-associated protein 1 |
| Nrf2 | erythroid 2-related factor 2 |
| ERK | extracellular regulated protein kinases |
| LPS | lipopolysaccharide |
| D-GalN | D-galactosamine |