Table 1.
Gene annotation and KEGG pathway of the differentially expressed genes in E. coli ATCC25922 in response to CFS from L. rhamnosus SCB0119.
| Gene ID | RPKM Control | RPKM CFS | log2 Ratio | Gene Annotation |
|---|---|---|---|---|
| Fatty acid degradation | ||||
| C7A06_RS17240 | 9.40 ± 0.16 | 2.62 ± 0.05 | −1.83961 | adhP; alcohol dehydrogenase AdhP |
| Biosynthesis of amino acids | ||||
| C7A06_RS27640 | 4.88 ± 1.53 | 21.23 ± 2.32 | 2.119947 | ilvN; acetolactate synthase small subunit |
| C7A06_RS27645 | 5.18 ± 0.68 | 24.79 ± 0.65 | 2.259582 | ilvI; acetolactate synthase 3 large subunit |
| C7A06_RS27660 | 17.62 ± 0.97 | 58.19 ± 0.51 | 1.723499 | leuA; 2-isopropylmalate synthase |
| C7A06_RS27665 | 15.63 ± 2.17 | 48.10 ± 7.45 | 1.621654 | leuB; 3-isopropylmalate dehydrogenase |
| C7A06_RS30700 | 15.96 ± 0.02 | 155.56 ± 1.24 | 3.284926 | lysC; lysine-sensitive aspartokinase 3 |
| ABC transporters | ||||
| C7A06_RS01665 | 14.27 ± 0.12 | 6.44 ± 0.43 | −1.14856 | nikE; nickel import ATP-binding protein NikE |
| C7A06_RS01670 | 39.57 ± 0.39 | 15.70 ± 1.38 | −1.33379 | nikD; nickel import ATP-binding protein NikD |
| C7A06_RS01675 | 43.38 ± 0.05 | 11.55 ± 1.74 | −1.90906 | nikC; nickel ABC transporter permease subunit NikC |
| C7A06_RS01680 | 39.74 ± 2.21 | 10.25 ± 2.12 | −1.95437 | nikB; nickel ABC transporter permease subunit NikB |
| C7A06_RS01685 | 10.05 ± 1.12 | 1.86 ± 0.26 | −2.43055 | nikA; nickel ABC transporter substrate-binding protein |
| C7A06_RS01780 | 0.15 ± 0.08 | 1.01 ± 0.42 | 2.788886 | livH; ABC transporter permease LivH |
| C7A06_RS01790 | 4.29 ± 0.27 | 14.90 ± 1.90 | 1.794947 | livG;ABC transporter ATP-binding protein LivG |
| C7A06_RS24375 | 3.74 ± 0.98 | 1.53 ± 0.65 | −1.29111 | fepD; Fe3+ -siderophore ABC transporter permease |