Table 2.

Gene contents of the P. rubens chloroplast genome based on genome annotation.

Functional Component	Genes
Photosystem I	psaA, psaB, psaC, and psaJ
Photosystem II	psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbJ, psbK, psbL, psbM, psbT, psbZ, and ycf12 (psb30)
Large ribosomal subunit	rpl2, rpl14, rpl16, rpl20, rpl22, rpl23, rpl32, rpl33, and rpl36
Small ribosomal subunits	rps2, rps3, rps4, rps7, rps8, rps11, rps12, rps14, rps15, rps18, and rps19
Subunits of cytochrome b/f complex	petA, petB, petD, petG, petL, and petN
ATP synthase (subunits)	atpA, atpB, atpE, atpF, atpH, and atpI
RNA polymerase	rpoA, rpoB, rpoC1, and rpoC2
Chlorophyll biosynthesis genes	chlB, chlN, and chlL
Protease	clpP
Maturase	matK
Envelope membrane protein	cemA
Translation initiation factor	infA
Cytochrome c biogenesis	ccsA
Subunit Acetyl-CoA-Carboxylate	accD
Subunit of Rubisco	rbcL
Hypothetical open reading frames	pafI (ycf3), pafII (ycf4), ycf1, ycf2, and ycf68
Ribosomal RNAs	rrn4.5, rrn5, rrn16, and rrn23
Transfer RNA	trnV-UAC/trnY-AUA, trnM-CAU, trnW-CCA, trnP-UGG, trnQ-UUG, trnK-UUU, trnL-CAA, trnV-GAC, trnP-GGG, trnL-UAG, trnN-GUU, trnR-ACG, trnA-UGC, trnI-GAU, trnT-GGU, trnS-UGA, trnG-GCC, trnF-CAU/trnM-CAU, trnS-GGA, trnT-UGU, trnL/trnL-UAA/UAG, trnF-GAA, trnG-GCC, trnR-UCU, trnC-GCA, trnD-GUC, trnY-GUA, and trnE-UUC