TABLE 2.
PCR primers and templates for probe preparation and genomic sequence analysis
| PCR product | Size (bp) | PCR primera
|
PCR template | |
|---|---|---|---|---|
| Left | Right | |||
| eibA probe | 1,000 | pr172 | pr173 | pCS6379 |
| eibE probe | 785 | pr219 | pr234 | CH6249 |
| eaaA probe | 737 | Standard vector | Standard vector | pDC6181 |
| eaaC min 42.0b | 1,250 | pr196 | pr197 | CH6304 |
| K-12 min 42.0b | 989 | pr221 | pr197 | K-12 |
Primer sequences were as follows: pr172, CTGTTTTGTCTGCGGCAATGGC; pr173, TTACCCACGCTGTACGGCTGGAAC; pr196, GGCCGTATGCTGATGTCTGTG; pr197, CCTGGGAACTTGGCTTTAATC; pr219, CTAGGACGGCAAAGTGTG; pr221, CGATGGCACCTGTCTATG; pr234, ACGCCCATGTTGTAGGAC.
The primers for amplifying the insert end and chromosomal attachment site relative to eibC were based on the sequences of eaaC (pr196) and the bacterial yecN (pr221) and yecD (pr197) genes.