Table 3.

Distribution of all predicted induced mutations identified in mutant rice.

Mutant Line	Treatment Type	Total Mutations *	SNVs	Indels	Total SNV/InDel Mutations	SNV/indel Mutation Frequency (bp/Event) **	Mutation Frequency All Variants bp/Event) **	SVs	Large Deletions	Duplications	Inversions	Insertions	Itx ***	Ctx ***	SV Frequency (bp/Event) **
43,801 (control) *	None	0	0	0	0	0	0	0	0	0	0	0	0	0	0
43,802_control	None	0	0	0	0	0	0	0	0	0	0	0	0	0	0
M149	gamma 150 Gy	7016	5205	1432	6637	64,788.31	61,288.48	379	339	16	7	17	2	5	1,134,564.64
M153	gamma 150 Gy	7294	5054	1919	6973	61,666.43	58,952.56	321	273	18	10	20	0	0	1,339,563.86
M166	gamma 300 Gy	7147	3924	2884	6808	63,160.99	60,165.10	339	306	11	7	15	3	2	1,268,436.58
M193	gamma 450 Gy	8816	6328	1861	8189	52,509.46	48,774.95	627	558	38	13	18	9	30	685,805.42
M225	X-ray 75 Gy	6158	4389	1248	5637	76,281.71	69,827.87	521	460	26	16	19	10	42	825,335.89
M232	X-ray 75 Gy	9546	6859	2188	9047	47,529.57	45,045.05	499	445	30	14	10	10	45	861,723.45
M238	X-ray 75 Gy	8128	4378	3303	7681	55,982.29	52,903.54	447	406	14	13	14	4	51	961,968.68
M242	X-ray 75 Gy	18,612	10,619	7652	18,271	23,534.56	23,103.37	341	285	18	15	23	7	21	1,260,997.07
M244	X-ray 75 Gy	9392	7172	1984	9156	46,963.74	45,783.65	236	188	18	12	18	3	34	1,822,033.90
M314	X-ray 150 Gy	6271	4425	1357	5782	74,368.73	68,569.61	489	425	24	22	18	7	28	879,345.60
M317	X-ray 150 Gy	6069	4216	1372	5588	76,950.61	70,851.87	481	421	24	16	20	8	33	893,970.89

* Nucleotide variation identified in non-mutated control material is considered to be natural variation. Natural variants found in mutated material are removed prior to mutation counting. ** Mutation frequency calculated as (genome size = 430 Mbp)/# observed mutations. *** Translocations are also recorded as deletions from the original location. This is reflected in the total SV count.