Table 4.
Interactions of the Native Ligand, Brazilein, and Brazilin on PI3Kα Protein
| Compound | Parameter | PI3Kα (PDB ID: 3T8M) | |||||
|---|---|---|---|---|---|---|---|
| Native ligand (3T8) | Docking Score (kcal/mol) | −14.69 | |||||
| RMSD (Å) | 1.315 | ||||||
| Ligand Atom | O | O | H | H | C | C | |
| Amino Acid | Ser806 | Val882 | Val882 | Tyr867 | Ile963 | Met963 | |
| Binding Type | H-bond | H-bond | H-bond | Arene-H | Arene-H | Arene-H | |
| Distance | 1.52 | 2.04 | 1.69 | ||||
| Brazilein | Docking Score (kcal/mol) | −9.78 | |||||
| RMSD (Å) | 0.879 | ||||||
| Ligand Atom | H | C | |||||
| Amino Acid | Glu880 | Ile963 | |||||
| Binding Type | H-bond | Arene-H | |||||
| Distance | 1.8 | ||||||
| Brazilin | Docking Score (kcal/mol) | −10.02 | |||||
| RMSD (Å) | 1.07 | ||||||
| Ligand Atom | H | ||||||
| Amino Acid | Tyr867 | ||||||
| Binding Type | Arene-H | ||||||
| Distance | |||||||