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. 2022 Aug;23(8):2623–2632. doi: 10.31557/APJCP.2022.23.8.2623

Table 5.

Interactions of the Native Ligand, Brazilein, and Brazilin on PI3KΔ Protein

Compound Parameter PI3KΔ (PDB ID: 4GB9)
Native ligand (benzimidazole) Docking Score (kcal/mol) -14.21
RMSD (Å) 1.066
Ligand Atom N O C C H
Amino Acid Lys830 Ile881 Ile963 Ile879 Trp812
Binding Type H-bond H-bond Arene-H Arene-H Arene-H
Distance 1.77 2.79
Brazilein Docking Score (kcal/mol) -9.76
RMSD (Å) 2.01
Ligand Atom H C C H
Amino Acid Ile963 Ile963 Ile963 Tyr867
Binding Type H-bond H-bond Arene-Arene Arene-H
Distance 1.97 3.2
Brazilin Docking Score (kcal/mol) -11.16
RMSD (Å) 2
Ligand Atom H C
Amino Acid Lys830 Ile963
Binding Type H-bond Arene-H
Distance 2.05