Table 5.
Interactions of the Native Ligand, Brazilein, and Brazilin on PI3KΔ Protein
| Compound | Parameter | PI3KΔ (PDB ID: 4GB9) | ||||
|---|---|---|---|---|---|---|
| Native ligand (benzimidazole) | Docking Score (kcal/mol) | -14.21 | ||||
| RMSD (Å) | 1.066 | |||||
| Ligand Atom | N | O | C | C | H | |
| Amino Acid | Lys830 | Ile881 | Ile963 | Ile879 | Trp812 | |
| Binding Type | H-bond | H-bond | Arene-H | Arene-H | Arene-H | |
| Distance | 1.77 | 2.79 | ||||
| Brazilein | Docking Score (kcal/mol) | -9.76 | ||||
| RMSD (Å) | 2.01 | |||||
| Ligand Atom | H | C | C | H | ||
| Amino Acid | Ile963 | Ile963 | Ile963 | Tyr867 | ||
| Binding Type | H-bond | H-bond | Arene-Arene | Arene-H | ||
| Distance | 1.97 | 3.2 | ||||
| Brazilin | Docking Score (kcal/mol) | -11.16 | ||||
| RMSD (Å) | 2 | |||||
| Ligand Atom | H | C | ||||
| Amino Acid | Lys830 | Ile963 | ||||
| Binding Type | H-bond | Arene-H | ||||
| Distance | 2.05 | |||||