Table 1.
Statistics of genomic variations and genotype-to-phenotype associations for metabolites in tea plants.
| WGS Germplasms | GBS Germplasms | RNA-seq Germplasms | Metabolites | ||||
|---|---|---|---|---|---|---|---|
| SNP | InDel | SNP | InDel | SNP | InDel | G2Ps | |
| Chr1 | 5,222,352 | 145,700 | 15,105 | 638 | 90,750 | 5,014 | 1,760 |
| Chr2 | 4,969,532 | 138,453 | 12,520 | 585 | 90,360 | 5,013 | 1,558 |
| Chr3 | 4,482,574 | 123,313 | 10,230 | 436 | 84,345 | 3,860 | 1,427 |
| Chr4 | 4,646,325 | 126,954 | 12,721 | 557 | 76,367 | 4,124 | 1,464 |
| Chr5 | 4,673,005 | 121,241 | 10,392 | 450 | 64,876 | 3,090 | 1,634 |
| Chr6 | 4,086,500 | 117,347 | 10,738 | 513 | 75,703 | 4,050 | 1,754 |
| Chr7 | 4,473,987 | 118,746 | 10,999 | 473 | 75,863 | 3,838 | 896 |
| Chr8 | 4,022,025 | 100,780 | 10,857 | 447 | 49,403 | 2,284 | 757 |
| Chr9 | 3,869,937 | 105,272 | 10,179 | 462 | 70,129 | 3,616 | 966 |
| Chr10 | 4,006,236 | 106,247 | 9,073 | 394 | 58,059 | 2,810 | 688 |
| Chr11 | 2,921,987 | 82,127 | 8,403 | 394 | 59,777 | 3,451 | 1,209 |
| Chr12 | 3,814,285 | 101,332 | 9,220 | 389 | 48,865 | 2,520 | 674 |
| Chr13 | 3,139,356 | 87,970 | 8,158 | 378 | 57,964 | 3,112 | 762 |
| Chr14 | 2,985,432 | 85,252 | 8,134 | 381 | 54,914 | 2,925 | 1,310 |
| Chr15 | 2,811,586 | 77,317 | 6,736 | 280 | 45,377 | 2,411 | 1,115 |
| UN | 8,859,214 | 246,973 | 14,293 | 648 | 162,059 | 7,287 | – |
| Total | 68,984,333 | 1,885,024 | 167,758 | 7,425 | 1,164,811 | 59,405 | 17,974 |