Table 1.
Relative ECM composition.
ECM protein | Healthy | CDH+ | p-value | CDH+ fold change w.r.t. Healthy | |||
---|---|---|---|---|---|---|---|
Mean | ± | Mean | ± | Mean | ± | ||
Biglycan | 1.15 | 0.27 | 0.97 | 0.32 | 0.50 | 0.84 | 0.28 |
Col1a1 | 10.30 | 1.34 | 10.01 | 0.15 | 0.73 | 0.97 | 0.01 |
Col1a2 | 3.86 | 0.63 | 4.09 | 0.16 | 0.57 | 1.06 | 0.04 |
Col2a1 | 0.98 | 0.66 | 0.32 | 0.02 | 0.16 | 0.33 | 0.02 |
Col3a1 | 2.58 | 0.67 | 2.13 | 0.53 | 0.42 | 0.83 | 0.21 |
Col4a1 | 1.75 | 0.06 | 2.15 | 0.13 | 0.01 | 1.23 | 0.07 |
Col4a2 | 0.60 | 0.27 | 0.66 | 0.34 | 0.84 | 1.09 | 0.57 |
Col5a2 | 0.42 | 0.38 | 0.75 | 0.14 | 0.23 | 1.76 | 0.33 |
Col6a1 | 2.53 | 0.93 | 2.38 | 0.59 | 0.83 | 0.94 | 0.23 |
Col6a2 | 1.32 | 0.40 | 2.39 | 0.63 | 0.07 | 1.81 | 0.47 |
Col6a3 | 1.78 | 0.41 | 1.93 | 0.57 | 0.73 | 1.08 | 0.32 |
Col6a6 | 0.15 | 0.26 | 0.63 | 0.29 | 0.09 | 4.27 | 1.92 |
Col12a1 | 0.68 | 0.88 | 0.86 | 0.19 | 0.74 | 1.27 | 0.28 |
Col14a1 | 2.11 | 0.63 | 0.98 | 0.38 | 0.06 | 0.47 | 0.18 |
Col18a1 | 0.00 | 0.00 | 0.32 | 0.33 | 0.17 | Inf | Inf |
Elastin | 0.54 | 0.54 | 0.64 | 0.29 | 0.80 | 1.18 | 0.54 |
EMILIN-1 | 1.91 | 0.49 | 2.29 | 0.67 | 0.47 | 1.20 | 0.35 |
EMILIN-2 | 0.60 | 1.03 | 0.21 | 0.18 | 0.56 | 0.35 | 0.31 |
Fibrillin-1 | 18.68 | 1.74 | 20.25 | 2.06 | 0.37 | 1.08 | 0.11 |
Fibrillin-2 | 13.38 | 3.47 | 14.45 | 0.71 | 0.63 | 1.08 | 0.05 |
Fibronectin | 8.83 | 2.39 | 8.71 | 0.19 | 0.94 | 0.99 | 0.02 |
Fibulin-2 | 0.24 | 0.41 | 0.54 | 0.38 | 0.40 | 2.28 | 1.61 |
Fibulin-5 | 1.39 | 1.27 | 0.77 | 0.40 | 0.46 | 0.55 | 0.29 |
Laminin alpha-2 | 0.19 | 0.32 | 0.11 | 0.20 | 0.76 | 0.61 | 1.05 |
Laminin alpha-4 | 0.37 | 0.65 | 0.00 | 0.00 | 0.37 | 0.00 | 0.00 |
Laminin alpha-5 | 1.14 | 0.62 | 0.75 | 0.50 | 0.45 | 0.66 | 0.44 |
Laminin beta-1 | 1.62 | 1.07 | 0.85 | 0.47 | 0.32 | 0.53 | 0.29 |
Laminin beta-2 | 1.07 | 0.94 | 1.28 | 0.25 | 0.73 | 1.20 | 0.23 |
Laminin gamma-1 | 1.81 | 0.99 | 2.03 | 0.64 | 0.76 | 1.13 | 0.35 |
Nidogen-1 | 1.49 | 1.36 | 1.17 | 0.76 | 0.74 | 0.79 | 0.51 |
Nidogen-2 | 0.68 | 0.67 | 0.32 | 0.33 | 0.44 | 0.47 | 0.48 |
Periostin | 3.63 | 1.25 | 3.32 | 0.52 | 0.71 | 0.91 | 0.14 |
Perlecan | 11.86 | 1.35 | 11.26 | 1.22 | 0.60 | 0.95 | 0.10 |
Versican | 0.36 | 0.62 | 0.45 | 0.39 | 0.84 | 1.25 | 1.08 |
Determined from spectral counts, data are percentages of total ECM spectra. Last column is fold change of CDH+ ECM components with respect to Healthy. Those in red show down regulation below 0.5-fold while those in green show upregulation greater than 1.5-fold.