Table 2.
Homing endonucleases in L. edodes mtDNAs.
| Species | Gene | HEG intron | HEG family | Length (aa) | Domain1 | Domain2 | Distance between domains (bp) |
|---|---|---|---|---|---|---|---|
| L. edodes | cox1 | intron1 | 2LAGRIDADG | 319 | LAGLIEADG | LAGFTDGDG | 110 |
| intron2 | 2LAGRIDADG | 440 | LVGVTDGDG | LVGFTEAEG | 143 | ||
| intron3 | 2LAGRIDADG | 288 | LAGLIDGDG | FSGFFDADG | 97 | ||
| intron4 | 2LAGRIDADG | 214 | IIGLILSDA | LAHWILGDG | 100 | ||
| intron5 | GIY-YIG | 367 | GVY | YIG | 10 | ||
| intron6 | 2LAGRIDADG | 255 | WVGLMDAEG | LSGFVEAEA | 129 | ||
| intron7 | GIY-YIG | 289 | IIY | YVG | 10 | ||
| cox3 | intron1 | 2LAGRIDADG | 223 | IIGSLLGDG | LAVWMMDDG | 100 | |
| nad1 | intron1 | LAGRIDADG | 184 | VIGFSYAEV | - | ||
| rnl | intron1 | GIY-YIG | 324 | FVY | YLG | 10 | |
| intron2 | LAGRIDADG | 196 | LGGFVEGEG | - | |||
| intron3 | 2LAGRIDADG | 367 | VTGLTDGEG | VQTYLTGES | 172 | ||
| rns | intron1 | 2LAGRIDADG | 401 | VTGFFDAEA | ISGFVSGEG | 151 | |
| Saccharomyces cerevisiae | I-SceI | 2LAGRIDADG | 235 | GIGLILGDA | LAYWFMDDG | 92 | |
| I-SceII | 2LAGRIDADG | 556 | LAGLIDGDG | FVGFFDADG | 97 | ||
| I-SceIII | 2LAGRIDADG | 321 | LAGLIEGDG | LAGMTDADG | 123 | ||
| I-SceIV | 2LAGRIDADG | 630 | MTGILLTDG | LAHMIMCDG | 101 | ||
| Moniliophthora rorei | cox1 | intron1 | 2LAGRIDADG | 413 | LVGVTDGDG | LVGFTEAEG | 141 |
| intron2 | 2LAGRIDADG | 357 | LTGLIEGDG | LSGIIESDG | 113 | ||
| intron3 | 2LAGRIDADG | 297 | LIGFSEGEG | ISGITDGEG | 110 | ||
| intron4 | 2LAGRIDADG | 298 | LAGLIEGDG | LAGFTQADG | 96 | ||
| intron5 | GIY-YIG | 242 | IIY | YVG | 10 | ||
| cox3 | intron1 | 2LAGRIDADG | 373 | WTGLIDGEG | IAGFVTGEG | 150 | |
| intron2 | 2LAGRIDADG | 395 | LAGLLEGDG | LAGLIDSDG | 111 | ||