Table 3.
Sulfate Group | Hydrogen Bond (I) | Hydrogen Bond (II) | Color | |||||
---|---|---|---|---|---|---|---|---|
Residue | Atom | Atoms | Distance | Occupancy | Distance | Occupancy | ||
IbSF | Dnr–4SO3− | O | Dnr(O3) | 2.85 | 99 | 2.87 | 60 | Purple |
Cnr–2SO3− | O | Bnr(O4) | 2.80 | 52 | 2.80 | 54 | Red | |
Bnr–2SO3− | O | Anr(O4) | 2.79 | 70 | 2.78 | 72 | Cyan | |
Dr–4SO3− | O | Anr(O2) | 2.76 | 100 | 2.75 | 100 | Green | |
Dr–2SO3− | O | Cr(O4) | 2.80 | 52 | DSb | DSb | Gray | |
Cr–2SO3− | O | Br(O4) | 2.80 | 51 | 2.80 | 48 | Magenta | |
Br–2SO3− | O | Ar(O4) | 2.79 | 59 | 2.79 | 59 | Blue | |
HfSF | Dnr–2SO3− | O | Dnr(O3) | 2.86 | 100 | 2.87 | 99 | Gray |
Dnr–2SO3− | O | Cnr(O4) | 2.77 | 73 | 2.78 | 73 | Teal | |
Bnr–2SO3− | O | Anr(O4) | 2.80 | 53 | 2.79 | 71 | Cyan | |
Anr–2SO3− | O | Br(O2) | 2.86 | 37 | DSb | DSb | Green | |
Dr–2SO3− | O | Cr(O4) | 2.78 | 70 | 2.79 | 62 | Violet | |
Br–2SO3− | O | Ar(O4) | 2.80 | 48 | 2.80 | 47 | Blue | |
Ar–2SO3− | O | Ar(O1) | 3.32 | 13 | 3.32 | 13 | Gray |
Mean of the hydrogen bond distances between the hydroxyl oxygen and the closest oxygen in the sulfate group. The color column shows the color of each hydrogen bonded pair in Fig. 6.
DS means the octasaccharides are 2-desulfated and that particular sulfate group is absent in the structure.