Table 1. Summary characteristics of the 16 libraries assembled using the “full” reference set (parameters –d 2 –C 0.1).
| Species | Reads | Loci (n) | Total (bp) | Coverage (median, s.d.) |
Depth (median, s.d.) |
|---|---|---|---|---|---|
| Allomaieta villosa (Gleason) Lozano | 22,583,550 | 682 | 1,486,675 | 0.72 (0.14) | 5 (10.28) |
| Bertolonia acuminata Gardner | 18,820,316 | 682 | 1,433,836 | 0.61 (0.13) | 3 (6.04) |
| Blakea schlimii (Naudin) Triana | 6,272,448 | 682 | 1,473,735 | 0.6 (0.16) | 3 (5.37) |
| Eriocnema fulva Naudin | 2,369,052 | 614 | 953,093 | 0.2 (0.09) | 1 (1.92) |
| Graffenrieda moritziana Triana | 18,255,622 | 683 | 1,646,960 | 0.74 (0.13) | 5 (16.22) |
| Henriettea barkeri (Urb. & Ekman) Alain | 3,904,930 | 621 | 993,742 | 0.25 (0.11) | 1 (4.76) |
| Merianthera pulchra Kuhlm. | 7,262,788 | 571 | 792,362 | 0.23 (0.14) | 1 (3.11) |
| Miconia dodecandra Cogn. | 14,915,062 | 683 | 1,820,433 | 0.76 (0.11) | 4 (11.04) |
| Nepsera aquatica (Aubl.) Naudin | 14,750,648 | 682 | 1,034,413 | 0.47 (0.17) | 3 (16.74) |
| Opisthocentra clidemioides Hook. f. | 6,985,796 | 676 | 1,159,469 | 0.39 (0.13) | 2 (3.52) |
| Pterogastra divaricata (Bonpl.) Naudin | 8,998,186 | 659 | 874,845 | 0.34 (0.15) | 2 (6.66) |
| Rhexia virginica L. | 12,157,014 | 674 | 967,659 | 0.38 (0.15) | 2 (17.31) |
| Rhynchanthera bracteata Triana | 22,213,604 | 528 | 596,533 | 0.21 (0.11) | 2 (10.62) |
| Salpinga maranoniensis Wurdack | 14,197,808 | 478 | 699,934 | 0.19 (0.11) | 1 (15.92) |
| Tibouchina longifolia (Vahl) Baill. | 9,425,454 | 682 | 994,943 | 0.42 (0.16) | 3 (7.2) |
| Triolena amazonica (Pilg.) Wurdack | 6,664,094 | 286 | 508,254 | 0.14 (0.07) | 1 (3.86) |
Note:
Reads, total number of reads in each library; Loci (n), number of recovered loci; Total (bp), total based pairs recovered; Coverage (median, s.d.), median and standard deviation coverage across individual loci; Depth (median, s.d.), median and standard deviation depth across individual loci.