. Author manuscript; available in PMC: 2022 Dec 13.

Published in final edited form as: J Mol Graph Model. 2021 Dec 21;111:108103. doi: 10.1016/j.jmgm.2021.108103

Table 4.

Summary of the average evaluation metrics for the shape-only dataset. The composite classes are excluded from the average; they are presented in Tables C7 to C10.

Method	Nearest Neighbor	First Tier	Second Tier	Mean Reciprocal Rank

3DZD	0.5	0.160	0.292	0.523
ProteinNet	0	0.088	0.195	0.126
APPFD	0.3	0.136	0.237	0.410
PWKSM	0.1	0.105	0.201	0.236
DGCNN	0	0.098	0.189	0.193