Table 3.
Comparison of proposed method with Lasso, elastic net, adaptive Lasso, using three experimental mixtures containing 6, 7, and 20 metabolites, respectively; and a library size of 61, 101, and 200 metabolites, respectively. Performance was evaluated based on average accuracy, sensitivity, and specificity
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Metrics | Proposed method | Lasso | Elastic Net | Adaptive Lasso | Chenomx | Bayesil | ASICS |
---|---|---|---|---|---|---|---|---|
Library size 61 | ||||||||
Accuracy | 1.00 | 0.72 | 0.62 | 0.75 | 0.80 | 0.64 | 0.80 | |
6 | Sensitivity | 1.00 | 1.00 | 1.00 | 1.00 | 0.67 | 1.00 | 0.57 |
Specificity | 1.00 | 0.69 | 0.58 | 0.73 | 0.82 | 0.60 | 0.81 | |
Accuracy | 1.00 | 0.77 | 0.79 | 0.64 | 0.89 | 0.64 | 0.83 | |
7 | Sensitivity | 1.00 | 1.00 | 1.00 | 1.00 | 0.71 | 1.00 | 0.33 |
Specificity | 1.00 | 0.74 | 0.76 | 0.59 | 0.91 | 0.59 | 0.86 | |
20 | Accuracy | 0.93 | 0.67 | 0.69 | 0.70 | 0.74 | 0.75 | 0.56 |
Sensitivity | 1.00 | 1.00 | 1.00 | 1.00 | 0.80 | 0.95 | 0.45 | |
Specificity | 0.90 | 0.51 | 0.54 | 0.56 | 0.71 | 0.66 | 0.59 | |
Library size 101 | ||||||||
Accuracy | 0.94 | 0.79 | 0.88 | 0.72 | 0.87 | 0.30 | 0.80 | |
6 | Sensitivity | 1.00 | 1.00 | 1.00 | 1.00 | 0.67 | 1.00 | 0.57 |
Specificity | 0.94 | 0.78 | 0.87 | 0.71 | 0.88 | 0.25 | 0.81 | |
Accuracy | 0.97 | 0.90 | 0.84 | 0.87 | 0.93 | 0.42 | 0.83 | |
7 | Sensitivity | 1.00 | 1.00 | 1.00 | 1.00 | 0.71 | 1.00 | 0.33 |
Specificity | 0.97 | 0.89 | 0.83 | 0.86 | 0.95 | 0.37 | 0.86 | |
Accuracy | 0.88 | 0.72 | 0.73 | 0.72 | 0.69 | 0.33 | 0.56 | |
20 | Sensitivity | 1.00 | 1.00 | 1.00 | 1.00 | 0.80 | 0.95 | 0.45 |
Specificity | 0.85 | 0.65 | 0.67 | 0.65 | 0.67 | 0.16 | 0.59 | |
Library size 200 | ||||||||
Accuracy | 0.94 | 0.86 | 0.86 | 0.83 | 0.92 | 0.30 | 0.80 | |
6 | Sensitivity | 1.00 | 1.00 | 1.00 | 1.00 | 0.67 | 1.00 | 0.57 |
Specificity | 0.93 | 0.85 | 0.85 | 0.82 | 0.93 | 0.25 | 0.81 | |
Accuracy | 0.98 | 0.86 | 0.86 | 0.92 | 0.96 | 0.42 | 0.83 | |
7 | Sensitivity | 1.00 | 1.00 | 1.00 | 1.00 | 0.71 | 1.00 | 0.33 |
Specificity | 0.97 | 0.85 | 0.85 | 0.92 | 0.97 | 0.37 | 0.86 | |
Accuracy | 0.86 | 0.74 | 0.75 | 0.74 | 0.76 | 0.33 | 0.56 | |
20 | Sensitivity | 1.00 | 1.00 | 1.00 | 1.00 | 0.80 | 0.95 | 0.45 |
Specificity | 0.84 | 0.71 | 0.72 | 0.71 | 0.75 | 0.16 | 0.59 |