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. 2022 May 10;24(1):140–160. doi: 10.1093/biostatistics/kxac015

Table 3.

Comparison of proposed method with Lasso, elastic net, adaptive Lasso, using three experimental mixtures containing 6, 7, and 20 metabolites, respectively; and a library size of 61, 101, and 200 metabolites, respectively. Performance was evaluated based on average accuracy, sensitivity, and specificity

Inline graphic Met. Metrics Proposed method Lasso Elastic Net Adaptive Lasso Chenomx Bayesil ASICS
Library size 61
  Accuracy 1.00 0.72 0.62 0.75 0.80 0.64 0.80
6 Sensitivity 1.00 1.00 1.00 1.00 0.67 1.00 0.57
  Specificity 1.00 0.69 0.58 0.73 0.82 0.60 0.81
  Accuracy 1.00 0.77 0.79 0.64 0.89 0.64 0.83
7 Sensitivity 1.00 1.00 1.00 1.00 0.71 1.00 0.33
  Specificity 1.00 0.74 0.76 0.59 0.91 0.59 0.86
20 Accuracy 0.93 0.67 0.69 0.70 0.74 0.75 0.56
  Sensitivity 1.00 1.00 1.00 1.00 0.80 0.95 0.45
  Specificity 0.90 0.51 0.54 0.56 0.71 0.66 0.59
Library size 101
  Accuracy 0.94 0.79 0.88 0.72 0.87 0.30 0.80
6 Sensitivity 1.00 1.00 1.00 1.00 0.67 1.00 0.57
  Specificity 0.94 0.78 0.87 0.71 0.88 0.25 0.81
  Accuracy 0.97 0.90 0.84 0.87 0.93 0.42 0.83
7 Sensitivity 1.00 1.00 1.00 1.00 0.71 1.00 0.33
  Specificity 0.97 0.89 0.83 0.86 0.95 0.37 0.86
  Accuracy 0.88 0.72 0.73 0.72 0.69 0.33 0.56
20 Sensitivity 1.00 1.00 1.00 1.00 0.80 0.95 0.45
  Specificity 0.85 0.65 0.67 0.65 0.67 0.16 0.59
Library size 200
  Accuracy 0.94 0.86 0.86 0.83 0.92 0.30 0.80
6 Sensitivity 1.00 1.00 1.00 1.00 0.67 1.00 0.57
  Specificity 0.93 0.85 0.85 0.82 0.93 0.25 0.81
  Accuracy 0.98 0.86 0.86 0.92 0.96 0.42 0.83
7 Sensitivity 1.00 1.00 1.00 1.00 0.71 1.00 0.33
  Specificity 0.97 0.85 0.85 0.92 0.97 0.37 0.86
  Accuracy 0.86 0.74 0.75 0.74 0.76 0.33 0.56
20 Sensitivity 1.00 1.00 1.00 1.00 0.80 0.95 0.45
  Specificity 0.84 0.71 0.72 0.71 0.75 0.16 0.59