TABLE 2.
Analysis of candidate ORFs downstream from tia
| H10407 protein | Closest homologue | Organism | BLASTPc | % of aa
|
Motif(s) | Location (putative) | |
|---|---|---|---|---|---|---|---|
| Identical | Similar | ||||||
| Orf2 | HP0733a | H. pylori | 3 × 10−10 | 38 | 56 | ATP/GTP binding | Inner membrane |
| Orf3 | HP0733b | H. pylori | 5 × 10−12 | 24 | 39 | SecA, FHIPEP | Inner membrane |
| Orf4 (leoA) | HP0731 | H. pylori | 1 × 10−68 | 30 | 52 | ATP/GTP binding, HlyD, type II secretion | Cytosol |
| Orf5 | YHBX | E. coli | 0 | 61 | 74 | Ion channel/porin/flagellar transport (FliP family) | Integral membrane |
a
aa 4 to 91.
b
aa 128 to 433.
c
Probability values obtained in BLAST alignment of predicted amino acid sequence and closest homologue.