Table 5.
Docking parameters of DPDS docked into SARS-CoV-2 hydrolase inhibitor proteins.
| Protein (PDB ID) | Bonded residues | Bond distance (Å) | Estimated inhibition constant (milli Molar) | Binding energy (kcal/mol) | Inter molecular energy (kcal/mol) | Reference RMSD |
|---|---|---|---|---|---|---|
| 7JRN | LEU`80 | 2.1 | 48.22 | -5.89 | -7.38 | 31.92 |
| PRO`77 | 2.5 | |||||
| ARG`65 | 2.2 | |||||
| 6XBI | THR`198 | 2.1 | 242.51 | -4.93 | -6.42 | 33.88 |
| LEU`208 | 2.2 | |||||
| PHE`219 | 2.7 | |||||
| 6XMK | GLN`189 | 2.8 | 377.41 | -4.67 | -6.16 | 36.69 |
| 6XFN | GLY`146 | 1.7 | 465.11 | -4.55 | -6.04 | 18.93 |