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. 2022 Jul 15;13(12):1504–1525. doi: 10.1039/d2md00143h

Binding constants (log Ks)a,b and parametersc calculated from the fluorescence titrations of 15a–c, 16a, 16c, 17a, 21a and 21b with double-stranded (ds-) polynucleotides at pH = 7.0 (buffer sodium cacodylate, I = 0.05 mol dm−3).

Compd ctDNA p(dAdT)2
log Ks I/I0c log Ks I/I0c
15a 6.5 3.4 5.5 7.2
15b 5.6 11.4 5.9 15.4
15c 6.2 7.6 6.0 9.5
16a NDd NDd 5.4 2.2
16c 6.4 63.1 5.9 71.5
17a NDd NDd 6.6 2.0
21a NDd NDd 5.3 4.9
21b NDd NDd NDd NDd
a

Accuracy of n ± 20%, consequently log Ks values vary in the same order of magnitude.

b

Processing of titration data by means of the Scatchard equation63 gave values of ratio n [bound compound]/[polynucleotide] from 0.1–0.4, for easier comparison all data were recalculated for fixed n = 0.2.; correlation coefficients were >0.99 for most of the calculated Ks.

c

I 0 – starting fluorescence intensity of 15a–c, 16a, 16c, 17a, 21a and 21b; I – fluorescence intensity of 15a–c, 16a, 16c, 17a, 21a and 21b/polynucleotide complex calculated using the Scatchard equation.

d

Not determined; fluorescence changes of the studied compound with polynucleotides were too small/linear for accurate calculation of binding constants.