Binding constants (log Ks)a,b and parametersc calculated from the fluorescence titrations of 15a–c, 16a, 16c, 17a, 21a and 21b with double-stranded (ds-) polynucleotides at pH = 7.0 (buffer sodium cacodylate, I = 0.05 mol dm−3).
| Compd | ctDNA | p(dAdT)2 | ||
|---|---|---|---|---|
| log Ks | I/I0c | log Ks | I/I0c | |
| 15a | 6.5 | 3.4 | 5.5 | 7.2 |
| 15b | 5.6 | 11.4 | 5.9 | 15.4 |
| 15c | 6.2 | 7.6 | 6.0 | 9.5 |
| 16a | NDd | NDd | 5.4 | 2.2 |
| 16c | 6.4 | 63.1 | 5.9 | 71.5 |
| 17a | NDd | NDd | 6.6 | 2.0 |
| 21a | NDd | NDd | 5.3 | 4.9 |
| 21b | NDd | NDd | NDd | NDd |
Accuracy of n ± 20%, consequently log Ks values vary in the same order of magnitude.
Processing of titration data by means of the Scatchard equation63 gave values of ratio n [bound compound]/[polynucleotide] from 0.1–0.4, for easier comparison all data were recalculated for fixed n = 0.2.; correlation coefficients were >0.99 for most of the calculated Ks.
I 0 – starting fluorescence intensity of 15a–c, 16a, 16c, 17a, 21a and 21b; I – fluorescence intensity of 15a–c, 16a, 16c, 17a, 21a and 21b/polynucleotide complex calculated using the Scatchard equation.
Not determined; fluorescence changes of the studied compound with polynucleotides were too small/linear for accurate calculation of binding constants.