Table 2.
Similarity of expected MTAs using assigned SNPs for pGWAS and eGWAS
| Well-watered | Rain-fed | |||||||
|---|---|---|---|---|---|---|---|---|
| pGWAS | BRR | gBLUP | rrBLUP | pGWAS | BRR | gBLUP | rrBLUP | |
| MTA | 283 | 362 | 358 | 294 | 194 | 364 | 361 | 301 |
| Same as pGWAS | - | 212 | 230 | 195 | - | 137 | 139 | 122 |
| Different with pGWAS | - | 151 | 129 | 100 | - | 228 | 223 | 180 |
| pGWAS is the same as eGWAS(BRR,gBLUP,rrBLUP) | 239 | - | - | - | 146 | - | - | - |
| Similarity(%) | - | 74.91 | 81.27 | 68.90 | - | 70.61 | 71.64 | 62.88 |
| GO | 12 | 18 | 15 | 16 | 13 | 22 | 20 | 16 |
| Same as pGWAS | - | 8 | 8 | 7 | - | 10 | 9 | 8 |
| Different with pGWAS | - | 10 | 7 | 9 | - | 12 | 11 | 8 |
| pGWAS is the same as eGWAS(BRR,gBLUP,rrBLUP) | 8 | - | - | - | 10 | - | - | - |
| Similarity(%) | - | 66.67 | 66.67 | 58.33 | - | 76.92 | 69.23 | 61.53 |