Table 1.

Results for HPH in Simulation A.

Nominal level		Actual	Number of declared	Number of declared truly	Total number of
of FDR	Method	FDR	heterosis genes	heterosis genes	heterosis genes
0.01	SBA	0.0018	495	494	613
	SBA_div	0.0021	494	493
	eBayes_Laplace	0.0175	567	557
	eBayes_Normal	0.0228	576	563
0.05	SBA	0.0129	562	555	613
	SBA_div	0.0116	561	555
	eBayes_Laplace	0.1004	657	591
	eBayes_Normal	0.1145	672	595
0.1	SBA	0.0420	609	583	613
	SBA_div	0.0405	607	583
	eBayes_Laplace	0.1829	736	601
	eBayes_Normal	0.2018	756	604
0.2	SBA	0.1305	694	603	613
	SBA_div	0.1297	692	602
	eBayes_Laplace	0.3150	889	609
	eBayes_Normal	0.3352	917	610