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. 2022 Dec 15;23:832. doi: 10.1186/s12864-022-09065-8

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© The Author(s) 2022

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 1 — GIFT genome assembly. a Assembly pipeline to combine PacBio HiFi, CLR, and 10X Genomics reads. Input data is denoted by dotted boxes, assembly tools are denoted by solid boxes and output assemblies (A1 – A6) corresponding to those described above are marked by thin arrows. b Comparison of contig sizes between the current O. niloticus assembly (UMD, [16]) prior scaffolding and anchoring to the chromosomes, and the successive assemblies produced. c Comparison of scaffold sizes between all assemblies including chromosome anchored assemblies (UMD, A7)