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. 2022 Dec 1;50(21):12309–12327. doi: 10.1093/nar/gkac1115

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© The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Repetitive elements in scaffolded and non-scaffolded contigs. (A) Stacked barplot of the cumulative length of various repetitive elements split into the scaffolded nuclear genome (left) and non-scaffolded contigs (right) for the CLR and HiFi assemblies. The height of the bars for the scaffolded genome is 143 Mb, the k-mer based genome size estimate by findGSE (43). (B) Fractions of the repetitive element found first within 2 kb of each contig edge in scaffolded contigs (left) and non-scaffolded contigs (right).