Table 2.
Primers used for Methylation-specific polymerase chain reaction
Step. | Gene of promoter | Forward primer | Reverse primer | annealing temperature | PCR product |
---|---|---|---|---|---|
Stage I | P16 | GAAGAAAGAGGAGGGGTTGG | CTACAAACCCTCTACCCACC | 60°C | 280 |
MGMT | GGATATGTTGGGATAGTT | CCAAAAACCCCAAACCC | 52°C | 289 | |
RASSF1A | GGAGGGAAGGAAGGGTAAGG | CAACTCAATAAACTCAAACTCCC | 58°C | 260 | |
Stage II | P16 M | TTATTAGAGGGTGGGGCGGATCGC | GACCCCGAACCGCGACCGTAA | 65°C | 150 |
P16 U | TTATTAGAGGGTGGGGTGGATTGT | CAACCCCAAACCACAACCATAA | 65°C | 151 | |
MGMT M | TTTCGACGTTCGTAGGTTTTCGC | GCACTCTTCCGAAAACGAAACG | 59°C | 81 | |
MGMT U | TTTGTGTTTTGATGTTTGTAGGTTTTTGT | AACTCCACACTCTTCCAAAAACAAAACA | 59°C | 93 | |
RASSF1A M | GGGGGTTTTGCGAGAGCGC | CCCGATTAAACCCGTACTTCG | 65°C | 204 | |
RASSF1A U | GGTTTTGTGAGAGTGTGTTTAG | ACACTAACAAACACAAACCAAAC | 65°C | 170 |