Table 2.
Comparison between the number of LPs solved with the proposed algorithm and the literature algorithm as implemented by COBRApy on some selected FVA problems
| Model name | Proposed FVA algorithm LPs | COBRApy FVA LPs | Ratio |
|---|---|---|---|
| iAB_RBC_283 | 602 | 939 | 0.64 |
| iAF1260b | 3108 | 4777 | 0.65 |
| iAT_PLT_636 | 812 | 2014 | 0.40 |
| iEC1356_Bl21DE3 | 3499 | 5481 | 0.64 |
| iEC1364_W | 3525 | 5529 | 0.64 |
| iECSP_1301 | 3489 | 5425 | 0.64 |
| iIS312_Amastigote | 686 | 1039 | 0.66 |
| iJN1463 | 3890 | 5855 | 0.66 |
| iJO1366 | 3361 | 5167 | 0.65 |
| iLB1027_lipid | 5024 | 8913 | 0.56 |
| iLJ478 | 961 | 1305 | 0.73 |
| iMM904 | 2120 | 3155 | 0.67 |
| iNJ661 | 1477 | 2051 | 0.72 |
| Recon3D | 6082 | 21201 | 0.29 |