Table 2.
Distribution of isolates at two sites and in three matrices according CCs and the index of diversity
| matrix | Site S1 | Site S2 | |||||||
|---|---|---|---|---|---|---|---|---|---|
| manure | lagoon | soil | Total | manure | lagoon | soil | Total | ||
| CC1 | 3 | 2 | 5 | 9 | 7 | 6 | 22 | ||
| CC4 | 1 | 1 | 1 | 4 | 5 | ||||
| CC5 | 1 | 1 | 2 | 1 | 1 | ||||
| CC6 | 2 | 1 | 1 | 4 | 1 | 1 | 4 | 6 | |
| CC7 | 1 | 1 | |||||||
| CC8 | 2 | 1 | 1 | 4 | 1 | 1 | |||
| CC14 | 4 | 1 | 2 | 7 | |||||
| CC21 | 2 | 2 | |||||||
| CC37 | 4 | 4 | |||||||
| CC54 | 1 | 1 | 2 | ||||||
| CC59 | 2 | 2 | 4 | ||||||
| CC77 | 1 | 2 | 1 | 4 | 2 | 2 | 4 | ||
| CC90 | 1 | 1 | |||||||
| CC207 | 3 | 2 | 5 | ||||||
| CC224 | 2 | 1 | 1 | 4 | 1 | 1 | |||
| CC379 | 1 | 1 | |||||||
| CC415 | 2 | 2 | |||||||
| nd | 1 | 1 | 1 | 1 | 2 | ||||
| Total | 24 | 10 | 11 | 45 | 17 | 16 | 18 | 51 | |
| ID | 0.94 | 0.93 | 0.96 | 0.94 | 0.68 | 0.82 | 0.82 | 0.78 | |
| CI95% | [0.91–0.97] | [0.87–1.00] | [0.91–1.02] | [0.92–0.96] | [0.50–0.87] | [0.64–1.00] | [0.73–0.90] | [0.68–0.87] | |
ID: Diversity index; CI: confidence interval at 95%.