TABLE 2.
Overview of supported strainsa
| Species | Strain | KEGG ID | UniProt ID | Taxon ID |
|---|---|---|---|---|
| Acinetobacter baumannii | AYE | aby | ACIBY | 509173 |
| Acinetobacter baumannii | MDR-ZJ06 | abz | ACIBM | 497978 |
| Bacteroides fragilis | NCTC 9343 | bfs | BACFN | 272559 |
| Bacteroides ovatus | 3725 D1 iv | boa | BACOV | 28116 |
| Bacteroides thetaiotaomicron | VPI-5482 | bth | BACTN | 226186 |
| Clostridioides difficile | 630 | cdf | CLOD6 | 272563 |
| Clostridioides difficile | R20291 | cdl | CLODR | 645463 |
| Enterobacter cloacae | ATCC 13047 | enc | ENTCC | 716541 |
| Enterococcus faecium | DO | efu | ENTFD | 333849 |
| Escherichia coli | K-12 MG1655 | eco | ECOLI | 511145 |
| Escherichia coli | K-12 W3110 | ecj | ECOLI | 316407 |
| Escherichia coli | O157:H7 EDL933 | ece | ECO57 | 155864 |
| Escherichia coli | O157:H7 Sakai | ecs | ECO57 | 386585 |
| Escherichia coli | BL21(DE3) | ebd | ECOBD | 469008 |
| Klebsiella pneumoniae | MGH 78578 | kpn | KLEP7 | 272620 |
| Prevotella melaninogenica | ATCC 25845 | pmz | PREMB | 553174 |
| Pseudomonas aeruginosa | UCBPP-PA14 | pau | PSEAB | 208963 |
| Pseudomonas aeruginosa | PAO1 | pae | PSEAE | 208964 |
| Staphylococcus aureus | COL | sac | STAAC | 93062 |
| Staphylococcus aureus | USA300 FPR3757 | saa | STAA3 | 367830 |
| Staphylococcus aureus | NCTC8325 | sao | STAA8 | 93061 |
| Staphylococcus aureus | Newman | sae | STAAE | 426430 |
| Streptococcus sanguinis | SK36 | ssa | STRSV | 388919 |
a
Column 1 contains the species, column 2 the strain, column 3 the KEGG strain identifier, column 4 the Uniprot strain identifier, and column 5 the NCBI Taxonomy identifier. These strains were chosen because they are the most common strains in biomedical high-throughput experiments deposited in public data repositories.