TABLE 2.
GO Slim terms with significantly different abundance
| Accessiona | GO term | Bulk-Desert |
Bulk-North |
Bulk-Elite |
Desert-Elite |
North-Elite |
Desert-North |
||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| log2 (fold change) | FDR | log2 (fold change) | FDR | log2 (fold change) | FDR | log2 (fold change) | FDR | log2 (fold change)b | FDRc | log2 (fold change) | FDR | ||
| GO:0005975 | Carbohydrate metabolic process | 0.23 | 3.59 × 107 | 0.29 | 2.42 × 10−11 | 0.34 | 1.03 × 10−14 | 1.05 × 10−1 | 3.99 × 10−2 | - | NS | 6.37 × 10−2 | 8.28 × 10−1 |
| GO:0007155 | Cell adhesion | −0.06 | 6.62 × 10−1 | 0.03 | 8.11 × 10−1 | 0.26 | 2.17 × 10−2 | 3.23 × 10−1 | 1.84 × 10−2 | - | NS | 8.97 × 10−2 | 9.10 × 10−1 |
| GO:0009405 | Pathogenesis | 1.21 | 4.64 × 10−5 | 1.25 | 2.65 × 10−5 | 1.80 | 2.66 × 10−10 | 5.88 × 10−1 | 9.05 × 10−2 | - | NS | 3.26 × 10−2 | 9.79 × 10−1 |
| GO:0009628 | Response to abiotic stimulus | 1.33 | 4.65 × 10−4 | 1.45 | 1.03 × 10−4 | 1.70 | 3.20 × 10−6 | 3.66 × 10−1 | 4.26 × 10−1 | - | NS | 1.22 × 10−1 | 9.79 × 10−1 |
| GO:0015979 | Photosynthesis | −0.84 | 1.18 × 10−4 | −0.89 | 4.13 × 10−5 | −1.20 | 1.03 × 10−8 | −3.60 × 10−1 | 1.69 × 10−1 | - | NS | −4.63 × 10−2 | 9.79 × 10−1 |
| GO:0016226 | Iron-sulfur cluster assembly | −0.16 | 7.53 × 10−6 | −0.16 | 1.55 × 10−6 | −0.21 | 1.70 × 10−10 | −5.77 × 10−2 | 1.69 × 10−1 | - | NS | −8.71 × 10−3 | 9.79 × 10−1 |
| GO:0016310 | Phosphorylation | −0.14 | 3.24 × 10−2 | −0.18 | 6.04 × 10−3 | −0.18 | 5.10 × 10−3 | −3.45 × 10−2 | 6.95 × 10−1 | - | NS | −3.66 × 10−2 | 9.79 × 10−1 |
| GO:0017000 | Antibiotic biosynthetic process | −0.24 | 2.72 × 10−3 | −0.15 | 6.67 × 10−2 | −0.15 | 4.81 × 10−2 | 8.49 × 10−2 | 4.08 × 10−1 | - | NS | 9.06 × 10−2 | 8.28 × 10−1 |
| GO:0019222 | Regulation of metabolic process | −0.21 | 2.72 × 10−3 | −0.21 | 3.20 × 10−3 | −0.36 | 1.13 × 10−7 | −1.42 × 10−1 | 8.09 × 10−2 | - | NS | 5.68 × 10−3 | 9.79 × 10−1 |
| GO:0042221 | Response to chemical | 0.61 | 7.40 × 10−11 | 0.61 | 2.42 × 10−11 | 0.76 | 5.61 × 10−17 | 1.51 × 10−1 | 1.69 × 10−1 | - | NS | 5.19 × 10−3 | 9.79 × 10−1 |
| GO:0043934 | Sporulation | −0.48 | 2.08 × 10−5 | −0.57 | 2.62 × 10−7 | −0.81 | 4.76 × 10−14 | −3.31 × 10−1 | 1.84 × 10−2 | - | NS | −9.21 × 10−2 | 9.10 × 10−1 |
| GO:0065003 | Protein-containing complex assembly | 0.59 | 4.67 × 10−7 | 0.60 | 2.62 × 10−7 | 0.53 | 3.29 × 10−6 | −5.78 × 10−2 | 6.95 × 10−1 | - | NS | 7.51 × 10−3 | 9.79 × 10−1 |
| GO:0071840 | Cellular component organization or biogenesis | 0.12 | 1.90 × 10−2 | 0.18 | 3.06 × 10−4 | 0.25 | 5.59 × 10−7 | 1.22 × 10−1 | 3.99 × 10−2 | - | NS | 5.89 × 10−2 | 8.28 × 10−1 |
| GO:0071973 | Bacterial-type flagellum-dependent cell motility | 0.75 | 3.82 × 10−13 | 0.71 | 3.51 × 10−12 | 0.86 | 1.70 × 10−17 | 1.07 × 10−1 | 4.26 × 10−1 | - | NS | −3.68 × 10−2 | 9.79 × 10−1 |
a
Significantly differentially abundant GO Slim terms (Benjamini-Hochberg-corrected FDR value of <0.05, Wald test) with log2 fold change values greater than ±0.20 in at least one comparison.
b
Hyphens indicate data not presented due to c.
c
NS, not significant.